Detailed information of FUN_006949-T1 in Acropora pulchra

Genomic Location: ptg000001l:18689531...18702913
NR annotation: XP_029213382.2, LON peptidase N-terminal domain and RING finger protein 3-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q496Y0LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens OX=9606 GN=LONRF3 PE=1 SV=1
Q9D4H7LON peptidase N-terminal domain and RING finger protein 3 OS=Mus musculus OX=10090 GN=Lonrf3 PE=2 SV=1
Q8HXH0LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca fascicularis OX=9541 GN=LONRF3 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001342 (this species only)
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity RING|U-box · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02190
all species →		LON_substr_bdgATP-dependent protease La (LON) substrate-binding domain FamilyInterproscan
PF13923
all species →		zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF13445
all species →		zf-RING_UBOXRING-type zinc-fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR003111
all species →		DomainLon protease, N-terminal domainInterproscan
IPR046336
all species →		Homologous_superfamilyLon protease, N-terminal domain superfamilyInterproscan
IPR015947
all species →		Homologous_superfamilyPUA-like superfamilyInterproscan
IPR027370
all species →		DomainZinc finger, RING-type, eukaryoticInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR019734
all species →		RepeatTetratricopeptide repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23327
all species →		RING FINGER PROTEIN 127Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_006949-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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