Detailed information of FUN_006955-T1 in Colpophyllia natans

Genomic Location: contig_8:7157282...7177174
NR annotation: XP_020620969.1, breast cancer type 1 susceptibility protein homolog [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q864U1Breast cancer type 1 susceptibility protein homolog OS=Bos taurus OX=9913 GN=BRCA1 PE=1 SV=1
Q95153Breast cancer type 1 susceptibility protein homolog OS=Canis lupus familiaris OX=9615 GN=BRCA1 PE=3 SV=1
O54952Breast cancer type 1 susceptibility protein homolog OS=Rattus norvegicus OX=10116 GN=Brca1 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00533BRCTBRCA1 C Terminus (BRCT) domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR001357DomainBRCT domainInterproscan
IPR036420Homologous_superfamilyBRCT domain superfamilyInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR031099FamilyBRCA1-associatedInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13763BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006974Biological ProcessDNA damage responseInterproscan
GO:0031436Cellular ComponentBRCA1-BARD1 complexInterproscan
GO:0035066Biological Processobsolete positive regulation of histone acetylationInterproscan
GO:0035067Biological Processobsolete negative regulation of histone acetylationInterproscan
GO:0045717Biological Processnegative regulation of fatty acid biosynthetic processInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0070531Cellular ComponentBRCA1-A complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10605BRCA1; breast cancer type 1 susceptibility proteinEC:2.3.2.27
DNA repair and recombination proteinsko03400deepkoala

TOP