Gene detail

Detailed information of FUN_007050-T3 in Acropora pulchra

Genomic Location: ptg000001l:19849950...19863011
NR annotation: XP_015763160.1, PREDICTED: uncharacterized protein LOC107342197 isoform X1 [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_007050-T3

ATGTCGCAGGGTTTTTCTGTCAGCGATTATTTTCTGCCGGCCAAGATGCAAGAGTCTACAGAAGATTTAGCATCCAGGACAGTTTTAGTCAGAGATCTGTCCTCAAGATCGAAGGAAGCAGACGTCATTATACACTTTCAGAGAAAGCGAAATGGAGGCGGTGAGGTCGATAGTGTGAGGATGTTAGGCGAAGGAGTTGCAGTCGTTACGTTTGAAAAAAGGGAAGTTGCTCAGTCCGTTATGAAAATGACCCACAAAATACATGATAGTCTGTTATCCCTGGAGCCTTTCCACCGAGCGTCTCCTCGCCAGGTGTTCAAGAGAGTTTTCGGCCGCCTTGATCCTAGTACGCACGGAAAAAGTTTTACGCAAATGCAAACCATTCTCCATGTTGTACAACGCGAAAGAAATGTAGAGTGCAAAGAAATACCGGATGGCTTTGTCCTGTGTGGGAGCTTGGATGAAATTAAGGCAGTCAGCATCGCTTTGGAAAGCAAACTAATTGAAGAGAGGTCTTTAACGTGGACTTCCCTTGAGGAATTTAACCATGCGGCGAACGTCCTAACAGAATCCAAGGAAGCTCGTAAATCCTTATCAAAGGATGGGAGTGTAATGGGTAGTGTTTCTGAGCATGATCGCTTGCAGACTGAAAGTTCTTTACTAACTTTATCGTCACTGGATGGCCACGTAGAGCCACAAAAAATAAGTGAGGATGATAACGACGGATCCTCAGCAGTGAACACTCCATTCATGGAGTCGTGTCCTGCCGATGACTCTGTGTCGAAGATTGTAGAGCCCATCCAAAGTACAACACCAACCCAAGAAAACAATCAGTTAGCGTTGGATGAAAGATGTAACATAATAGAAGGCAGCGACTGCAAAGACAGGAACACTCCATTCTTGGAGTCGTGTCATGCCCATGACTCTGTGTCGAAGATTGTCGAGCCCATCCAAAGTACAACACCAACACAAGAAAACAATCAGTTAGCGTTGGATGAAAGATGTAACATAATAGAAGGCAGCGACTGCAAAGACAGGACTGATTTAAATGGTGACATATCAGGATCTGAATCTCAGTATAGCGTACTACTTGGTGATGGTTCGGCGCACCTTTCAAAAGCCAAGAAGATTAAGGCCCTGAACGAAGAAGAAATTTCCAAACGAAGCACGGAAAACACGGAAACAAAAGAATCTTGTGACGGTAAATCAGTATGTAAGAGCCCTGAGAAAAGAAAGTCGAGAGAGTTGAGCCCCCAGCATCGCAAACAAGCCCCAAAGAAATGCAAATTGATCGACTCACATGACATCCAACCTTGTGAAGGAAAATTAGCTGACGAAAATAGGAACACGATCCAATCCAGTAGCAGCACAACACTTGCATCAAACAAAGCGATTTACCAAAGCTCTTTGGAAGAAGAAAACCGTCAAGTGAAGAGTAATATTAAGGATTCCGAGAATAGAGGAAAACAGAAAACAAATGACGTTGACGCTGGCGTAGAAAATTTTGAAGAGTTCGTTACCGCGACTAATCTCACAATCAGGCTGTTTGTAGGGGACATAAGCAGACAACAAGTTGATGTTATTCTTTGTCCAACCAATGCAACAATCTCTTGTAGTGAGGGATTGACGAAGATGATACTTGACGAAGGAGGCCAAATAATAGAAGAGGAATTCCTCCGTAAAACGAAGGTTAAGGATGAATTTAGAGAAGGTTATACATTCATCACTTCCTCTGGTGAGTTACCTTCAAAAGCCATCCTCCATGCCGTCTTGCCTTTGTGGGAACCTGAAAAACAGGTTGAAAAGGATGTCAAGCGTTGTATCCACAGATGCCTAAAAGATGGACTTATATTGTGTTCTGGCCACAGACTGGAATCCATCGCTATTCCTCCCTTGGGACAACCTACGAACAACATCCCAATTGAAGTTTCAGCAGAAATTATAACTCGAGTCGTTGCAACGTTTAGTAGAAAGATTGGTCCTTTTCACAATGGAATCAAAGAGGTTCGTGTTGTTGCTGAAAATGACAAATCTCTCGAAACATTTGTTACAAGTTTCTTGTCGTTTTCATTCGCTGGCGAAACTCGATTTTTCGCCAACACGCGGAAGGAAGCTAAAAGCTCACTGCTAATTGCAAATAATGCTGAAGCAAGCAATTTCGTGTCGTCACAGACGTACCCTGAGGCAAAATGTGAAAACAAAGCTGCAAATTTCAATCATGCAACTGGTAAGGCGACTGAAGAACTACCAGATGTAGGTTCTATTGCACTAAACAAAGCGGAAGGTAACGGGGAGATTCAAGCTGATTTATCTGGACAGGCTGTGCGGAATAAGGACGTGAGGAAATATGTCAGTGATAACCAACAGAATGCAGCAGTCAATTCCCAGAGAGAGGAATGTGGAGAGATGATTTCTTCATTTGCTAATAATCCAGTACAATGTACTGAAGTTGCTATGATGAAAGCAATTCAAGAAGCGACCAAAACTGCTCATCCCGATACGACTGAACGGAAGGTCGTTGAAGAAGAGATACTTGGGTCTGAACACCGTAAGGAAGAGGTCACCTCGCATATTGATCAGGAAGAAAAAGTGATAGCAAATGCTCAATCCTGCAGCAGAGCGGCGACTGAAATGTCCAGACAGCCCAAACATGGCACTCAGTCTCCTAAAATAAAAGAATCCTTATTTCCAAAGAGAGTAGGTGAAAAATTTCGAAGCAGACGTCACGGTAACCGGGACATTTTAACAAATGGAACACATGATTCACCTAGTCCAAGTAATCAATGTAGGCTGGTTGCTTCCGCAAATCGTCCTGCAAAACCTATCACTTCACCAACTGTTGAGAATCTCTTAAAGGCCGACCTTTGCTTAGGCCCTCAGGGTTTGAAACTTACACTCGAAGACAGGCTTGGTGGTGACTCACACAAAAATGGAGGCCCAAGTCGAGAGGAAAGGATTTTGGGAGAAATGGAGCAACAACTGTCTTCCTTCTTTGCTGAGGGGAATCATGGTATGTATTAA

Transcript

FUN_007050-T3

AGAAACTGGCTAATTTTCCGAGAATCGGGAGGTGAAGTCCCTGGAATGACATCATGCATTACTTTGGCATGACAAATGACAATATATACCAAGTCTTCATTAAGGTTGCAAGGTAATTTTAAAATACAAAACAGTCAATAGCGAAGAATACATTGTTCGTGATACATTGAGCGAAGAATCTTACGCTTTGAGCTATTCAACAACCATTGCCTTCCCTACAAGCTACCATACTTTGTCAACGATTTCAAGAACTTAAGAATCAACACAACAGTTAAAGATCCTCTTCCGGCGGTCGAGTTTGCTGAAGACATGTCGCAGGGTTTTTCTGTCAGCGATTATTTTCTGCCGGCCAAGATGCAAGAGTCTACAGAAGATTTAGCATCCAGGACAGTTTTAGTCAGAGATCTGTCCTCAAGATCGAAGGAAGCAGACGTCATTATACACTTTCAGAGAAAGCGAAATGGAGGCGGTGAGGTCGATAGTGTGAGGATGTTAGGCGAAGGAGTTGCAGTCGTTACGTTTGAAAAAAGGGAAGTTGCTCAGTCCGTTATGAAAATGACCCACAAAATACATGATAGTCTGTTATCCCTGGAGCCTTTCCACCGAGCGTCTCCTCGCCAGGTGTTCAAGAGAGTTTTCGGCCGCCTTGATCCTAGTACGCACGGAAAAAGTTTTACGCAAATGCAAACCATTCTCCATGTTGTACAACGCGAAAGAAATGTAGAGTGCAAAGAAATACCGGATGGCTTTGTCCTGTGTGGGAGCTTGGATGAAATTAAGGCAGTCAGCATCGCTTTGGAAAGCAAACTAATTGAAGAGAGGTCTTTAACGTGGACTTCCCTTGAGGAATTTAACCATGCGGCGAACGTCCTAACAGAATCCAAGGAAGCTCGTAAATCCTTATCAAAGGATGGGAGTGTAATGGGTAGTGTTTCTGAGCATGATCGCTTGCAGACTGAAAGTTCTTTACTAACTTTATCGTCACTGGATGGCCACGTAGAGCCACAAAAAATAAGTGAGGATGATAACGACGGATCCTCAGCAGTGAACACTCCATTCATGGAGTCGTGTCCTGCCGATGACTCTGTGTCGAAGATTGTAGAGCCCATCCAAAGTACAACACCAACCCAAGAAAACAATCAGTTAGCGTTGGATGAAAGATGTAACATAATAGAAGGCAGCGACTGCAAAGACAGGAACACTCCATTCTTGGAGTCGTGTCATGCCCATGACTCTGTGTCGAAGATTGTCGAGCCCATCCAAAGTACAACACCAACACAAGAAAACAATCAGTTAGCGTTGGATGAAAGATGTAACATAATAGAAGGCAGCGACTGCAAAGACAGGACTGATTTAAATGGTGACATATCAGGATCTGAATCTCAGTATAGCGTACTACTTGGTGATGGTTCGGCGCACCTTTCAAAAGCCAAGAAGATTAAGGCCCTGAACGAAGAAGAAATTTCCAAACGAAGCACGGAAAACACGGAAACAAAAGAATCTTGTGACGGTAAATCAGTATGTAAGAGCCCTGAGAAAAGAAAGTCGAGAGAGTTGAGCCCCCAGCATCGCAAACAAGCCCCAAAGAAATGCAAATTGATCGACTCACATGACATCCAACCTTGTGAAGGAAAATTAGCTGACGAAAATAGGAACACGATCCAATCCAGTAGCAGCACAACACTTGCATCAAACAAAGCGATTTACCAAAGCTCTTTGGAAGAAGAAAACCGTCAAGTGAAGAGTAATATTAAGGATTCCGAGAATAGAGGAAAACAGAAAACAAATGACGTTGACGCTGGCGTAGAAAATTTTGAAGAGTTCGTTACCGCGACTAATCTCACAATCAGGCTGTTTGTAGGGGACATAAGCAGACAACAAGTTGATGTTATTCTTTGTCCAACCAATGCAACAATCTCTTGTAGTGAGGGATTGACGAAGATGATACTTGACGAAGGAGGCCAAATAATAGAAGAGGAATTCCTCCGTAAAACGAAGGTTAAGGATGAATTTAGAGAAGGTTATACATTCATCACTTCCTCTGGTGAGTTACCTTCAAAAGCCATCCTCCATGCCGTCTTGCCTTTGTGGGAACCTGAAAAACAGGTTGAAAAGGATGTCAAGCGTTGTATCCACAGATGCCTAAAAGATGGACTTATATTGTGTTCTGGCCACAGACTGGAATCCATCGCTATTCCTCCCTTGGGACAACCTACGAACAACATCCCAATTGAAGTTTCAGCAGAAATTATAACTCGAGTCGTTGCAACGTTTAGTAGAAAGATTGGTCCTTTTCACAATGGAATCAAAGAGGTTCGTGTTGTTGCTGAAAATGACAAATCTCTCGAAACATTTGTTACAAGTTTCTTGTCGTTTTCATTCGCTGGCGAAACTCGATTTTTCGCCAACACGCGGAAGGAAGCTAAAAGCTCACTGCTAATTGCAAATAATGCTGAAGCAAGCAATTTCGTGTCGTCACAGACGTACCCTGAGGCAAAATGTGAAAACAAAGCTGCAAATTTCAATCATGCAACTGGTAAGGCGACTGAAGAACTACCAGATGTAGGTTCTATTGCACTAAACAAAGCGGAAGGTAACGGGGAGATTCAAGCTGATTTATCTGGACAGGCTGTGCGGAATAAGGACGTGAGGAAATATGTCAGTGATAACCAACAGAATGCAGCAGTCAATTCCCAGAGAGAGGAATGTGGAGAGATGATTTCTTCATTTGCTAATAATCCAGTACAATGTACTGAAGTTGCTATGATGAAAGCAATTCAAGAAGCGACCAAAACTGCTCATCCCGATACGACTGAACGGAAGGTCGTTGAAGAAGAGATACTTGGGTCTGAACACCGTAAGGAAGAGGTCACCTCGCATATTGATCAGGAAGAAAAAGTGATAGCAAATGCTCAATCCTGCAGCAGAGCGGCGACTGAAATGTCCAGACAGCCCAAACATGGCACTCAGTCTCCTAAAATAAAAGAATCCTTATTTCCAAAGAGAGTAGGTGAAAAATTTCGAAGCAGACGTCACGGTAACCGGGACATTTTAACAAATGGAACACATGATTCACCTAGTCCAAGTAATCAATGTAGGCTGGTTGCTTCCGCAAATCGTCCTGCAAAACCTATCACTTCACCAACTGTTGAGAATCTCTTAAAGGCCGACCTTTGCTTAGGCCCTCAGGGTTTGAAACTTACACTCGAAGACAGGCTTGGTGGTGACTCACACAAAAATGGAGGCCCAAGTCGAGAGGAAAGGATTTTGGGAGAAATGGAGCAACAACTGTCTTCCTTCTTTGCTGAGGGGAATCATGGTATGTATTAAAACTGAGTCGTAGATCTTCCAGAGCCCAGAGAATACCAAGCCCATGGAGTCAATTTAGCATAACAAAAATGCTGTGTGTTAAAATTGTTGGAAAAGGAATGCAAATGGTCGCTTGGAATTCAAAAGATTGGCCTACAACTCTTATATATGGGGTAGTGAGTGTTAAATAAAGTAACAAATGGGCGAAAAATGCCATTTGATTCTTCTGGAAAATACAGGGATTCAAACAATAGGTTTATTTGGCCGGTGTAATTAGGTAATGCATAATATAGCTACTTGATGGCAAGTTGCAAGGCATATGTCCTTACTGAAAGTGAAAAAGGGGTAACTATTGTAAGTTGCAAATAGATTTGAAGTCAAATGCTTTTAACCTAGCTTGATTTCTCATTTCGTTTGTCTTTATTTTTGATAATGAAGATACTAAGAAATGAAAAATGATAAGTTGAAAACATTTGATCTTACTTTAACTTAAATCATAATGACTAATCAATTATGTTAAGTGCATGTTCCAACCACAAGGCCTGTTAAAATACACTGTATAATGTGAAAATAAAACCAAACTTAATTCCTCAGCAGCACATGAAAATATGATCGCATGAAGACGATCCATCATGGCCATACCGACCCAAACCGTAACCCTAACCTCCGGTATTTCTTATTGGTAGACACAAGCTTAACGCCTGGATCTCAACAAAACTATAACCAAGTGATTGATGGAATCATAGCTGCCCCGCTTCCCGACAAGCAAGCCAACCAACCCCCTGGGGAATTGGTCTGGAAGATAGATAACGAAAGTCTCCCAGGATTTGAGGGATCTGGTACAATTGTTATGTCGTTTCATTTCTATAGTGGGACCCAGGGCACCGAACATCCAAACCCTGGAAATGAATACAAGGGAACATCTTACAAGGCGTACCTACCCGAAACAAACGAAGGAAAACACATCTTCAAGTTGCTTCGAAAAGCATTTGATGCTCGATTGTTATTTACTATTGTAAGTGGTACTTCCGACGGAGCTGGGTGTGTTGGTTTAAAAGACATCGAACTGAAGACGTCTTTTGCAAGGAACTTAAGGTAAACTTAAAAGTGGATTTTTTTAGTCGAAAGCAATGTAACTAAGAATCAATTTCTTAATTTTATCACTATTCACAACACTCAACGTGAGGAGCGAATCTAAAACTGCAAGACAACGCGTATTATTCACAGGAATATGCACATGCACGCGGTTTTGAATTGCAAGGGAGGTTAATTAATCTCGATGAACACCCCCTCTCCGCTGAGTCTCTGATCAGCGCCAAGGACGAATGTGGAGCAACCGACCTTCTTCCCCTCCCCCACACCCACCATCTTCTTTTTGGAAATTTCGTGTTTGACATGGTATGTCCCAGTTCCACTCCGCCAAAAGCGCCCGATCAATTGTGCCAAATCTTAATGAGTGCGAGGGGTGGGTGGTGTGGAATATCGAGAATATTTTACGCTGATACTCATTGTGAAAGAACGTGACTGGCTTGGTCAGCTGAAATACACACACTCGGGGATTTGTTAAGACGGATTCCGTTCAAAGTTCGAGCAATTACTTGCAAAAATTATTTACTAAAAATCTACTCACAGCACGGTAACTTCTTGGATGCTATTTAAAACATCTCATTGTAATTCAGTTCTGTAAGTGACCCTGCGATGAAATCCCCAAGCATTCTCGAGAAATTTAATGTCAAACTTCGTAAGAATGCTAAAAGAGAGTGTTATTGTGTTTACAACTAACGCGAAATATCCTTTTTAACTGAAATATGGATAACTTTTAAGTTCAATTTTCTCTCGCGGGGTCAGCTTGAGAGCTTAAATCTCGATAAGATCTTTTTACCTTTATTCAAAATATTACCATGCTAAGAGGATTTTTTGGTAACTTAATTTTTGCCAGTTTTTGTCATTATTGCTCGAATGTTGTGCGGAAATCATCTTAATTAAACTTAACTATAACCTAGTTCAAAACCAAGATTATTATATCACTAAAGTAGATGCAACTAACTCCAAAAGGAAAATTCGTTGTCAGCTGTTTCTTCCTGAATCTTTAAAAGTTGTTTGTTCTAATAGGGAAACTGCTACAACAGCATTGTTTTAAGAAGCAAAAGTAATTTACTACCACCTTGATCGAAAGTTGCCTCTTGGTGGCCATGAAATTTAATGTTGTTTCTTAATTGAAGTTTTCTTTGCATTTTTCTTCGCAGAACTGGTTACCCAGATCCTAGCTATTTGACAAGGGTGAGGCAACAACTGGTTGCCAAAGGAATCCACTGAAAAATTTAGCCAATCAGCTGGCTTTGTTTCTAAAAAAATAATCGAGTTTACTGAAAGACCGGAGCTAGGCTCATCACAGTGACTCTCTCCGGCAGAATCAACGGAACGGGACATTTCACGACTGCAAAAAACAAACATTTTATTTTTTGAAAAGCAAACCCTCCAAAATAACTTAGTTTGTTCGAAAATGACATATCCAACACGTAGCCTTTGGTTGCTATGAATGGTTGGATAAGAACTCGAGAAAATCAGTGGCTGAGTCAATTATTGTTCGTTGAAAATAAAAATTGTAACTCCGTTTATGACCTACACTAAAATGTGAAATACTCTTGGGAGGTCTGCATATTCCCAAGAGCATTCTGCAACAATAGTTTATGCAAAATTTGAGGGGCAAACAGAGTGCATTACGGGGAATTGGAAAATAGAGAAAAGTAGAAGTATTAATTTATGACACATTGGTAAATCAAATCTAGTTTATGTTATTGCTGTTCATCAACTAACTCTGGGCACCCTAATAAAACGACATTCTTTGCAATTTAATTACTGTCTCTCTCTTCGGCTTCAATCTTTTCAAACTTACTTTAGCTGTTTTGAACTCTGGATTCCATTGAAATTAGTTAGTTACCCTGGCTTTAATTCAGTTCTTAGGTAAATATTTATTCCTAGGATAAACGAATTAATTGTCAGTAAACTAAGATGACATTTAAGTTAGGAATACACTACATGATTGACAGTCATGAATTTTGTCTAAGTAACACCCCATTTTGAACACGCCCTCTTTTTTATAATCAAGAGGAGGCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32E73	O-acetyl-ADP-ribose deacetylase OS=Shigella dysenteriae serotype 1 (strain Sd197) OX=300267 GN=ymdB PE=3 SV=1
Q0T5Z6	O-acetyl-ADP-ribose deacetylase OS=Shigella flexneri serotype 5b (strain 8401) OX=373384 GN=ymdB PE=3 SV=1
A4W960	O-acetyl-ADP-ribose deacetylase OS=Enterobacter sp. (strain 638) OX=399742 GN=ymdB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011038 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01661 all species →	Macro	Macro domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR052056 all species →	Family	Mono-ADP-ribosyltransferase ARTD/PARP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14453 all species →	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0003950 all species →	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010629 all species →	Biological Process	negative regulation of gene expression	Interproscan
GO:0070212 all species →	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:0140289 all species →	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan
GO:1990404 all species →	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_007050-T3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.