Detailed information of FUN_007099-T1 in Siderastrea siderea

Genomic Location: contig_5:9164132...9172140
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09184
all species →		PPP4R2PPP4R2FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015267
all species →		FamilyProtein phosphatase 4 core regulatory subunit R2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16487
all species →		PPP4R2-RELATED PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0019888
all species →		Molecular Functionprotein phosphatase regulator activityInterproscan
GO:0030289
all species →		Cellular Componentprotein phosphatase 4 complexInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15425PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_007099-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
54TPM > 0
7Conditions
1,274.3Max TPM
221.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 11 294.30 1,274.25
holobiont · low.pH Control.temp 20 9 170.97 751.74
holobiont · control.pH_high.temp 20 13 241.58 1,167.75
holobiont · control.pH Control.temp 19 15 237.52 903.86
Whole organism 4 4 23.70 27.98
unannotated 1 1 31.40 31.40
live coral tissue/skeleton 1 1 45.43 45.43

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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