Gene detail

Detailed information of FUN_007120-T1 in Acropora pulchra

Genomic Location: ptg000001l:20725086...20727813
NR annotation: XP_015777596.1, PREDICTED: short coiled-coil protein B-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XJK1	Short coiled-coil protein B OS=Danio rerio OX=7955 GN=scocb PE=3 SV=1
Q5RJZ6	Short coiled-coil protein OS=Rattus norvegicus OX=10116 GN=Scoc PE=2 SV=1
Q78YZ6	Short coiled-coil protein OS=Mus musculus OX=10090 GN=Scoc PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007342 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10224 all species →	DUF2205	Short coiled-coil protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019357 all species →	Family	Short coiled-coil protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21614 all species →	SHORT COILED COIL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20316	SCOC; short coiled-coil protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.