Gene detail

Detailed information of FUN_007127-T1 in Colpophyllia natans

Genomic Location: contig_9:41975...70093
NR annotation: XP_020602109.1, vascular endothelial growth factor receptor 1-like, partial [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_007127-T1

ATGGTGAGGAGTTTTTTGGGTGTAAATATACCTGGTAGAGTTCGACCAATTATTGAGTTATTACCGAAAGGACCAGTACACATGCGTGAAGGAGGTACTGCCAACCTGACTTGCAAGATTAGTAAAGGTTTGCCTAAACCACAAATATCCTGGCTTAAAGATGGAAAGCGTATAGATAAGGGCGCGAAGACAACTTTGATTTTAACAAATGTAACAGACGAAGATGAGGGAGAGTACACCTGTATCGCACAAAATGATGGTGGTAATTTCACTGACAACATGTATTTTACAGTACAAATTCCACCTGAACGTAATCCAAAACTCAGGAATCATTCTGTTGCATTTAACTCTACGTTTAATTTGACATGCATTGTGAGAGGTGATCGTCCACTACAGATTAACTGGACTAAGAATGGTGTCGATCTTGGTAACCGAAACAAAAACACATACACTGTCATTCACGCGACTTTTAACCACACTGGCTGGTACAGATGTACAGCAGTAAACTGGGCAGGAAAGACACATGCTGAGTTTTGGATTGACATAACAGTCTCTCCTCAGATTTTTGTTTCTCCAAGAAACAAGTCTGTTCCTGAAGGCCACCCAGCAAACTTTAGCTGCAAAGCCACAGGTGTTCCTGAGCCGAGATTCTCCTGGACATTTAATGATGAGGACCTCCCATCAGGCATCAACCAAACCAGTGTCATTCAAGGATCATTTCTGGAGTTACCTAACACTACAAAACAAATGGAAGGTATCTACATGTGTAAAGCACAAAACAAAGCTGACGCAACAACTTCCTCTGCATATCTTCATGTTTTTGAAAAACCCACTGCTGAAGTTAGCCCAAAGCCATATCCAGAATTGTCAACTGGAGATGAGCTCAGATTAACTTGTCGAGTCAATAAAGCTACCGTGGCAATCAAATGGAAGAAGAATGATGATGACGTAATCCCAAGAGCACAGATTGATACACAAGTAGATAATAGAATGAGTAAACTTATTATTGAAGAAGTTGTGGAAGGTGATAGTGGTGAATATTCTTGTGAAGCGCATAACAGACCAGGTATTGTGGCCTGCTCTACTGTGAAGATCAATGTCAAGTCAGTCAAGGGTTCTGTTACCAGACTGGCTCTGGAGTGGTATTATATTGTGGGACCTGTTCTTGGTTGCATTGTCATATTTGCTGTTAGTTGGTACATCTGCAAACGTCGAAGGGCAGGGTATTTTAGAATTGGCCTGACATTTATTAAActtgattttattgttttatttctctgttgTGCCTATGcatcttttgttatttttcattgGCAATATAAAGCTGTGGCAAAGCTTCCTGATCAAGAGAAAGCAGTTGAGATGCAGTTGCTGAACGTTGAAGTGGATAAATGGGAAATTGCAGTTGACCATTTAATACTTCAAGAGGTCATTGGCAGGGGGGCATTTGGAGCAGTCTGGAGAGCACTTTTGAGTGAACCGGATGGAAAACCGGGAAATCGGACGGTTGCTGCAAAATGCTTTACACCCACTTCTGGGGAAGAAGGAAGAAAAGCTCTGATGAGGGAAATTGAACTGGGAAAGCTTCTTAGTGAAAACCAGCAGCCAAACATTGTTAAGTTTATTGGCTGTGTTACCACACAAGTTCATCCAATCATGGTCATGGAGTACTTGGTGTGCAGTGACTTGCTGGGCTATCTGAGGAAAAGCCGTGGAATTCATGACAAGTATCATCTTGGACAGGAGAGTGTTTCAAAGCTGGAAATATATGACCTAGTATTGTTTTCCAAACAGATTGCTGCTGGTATGGTGTATCTTGGATCCTATgggAGCGACAAAGTATTAGGCGCATTAGAAAAGAGACGCGAAAAATTAGAGGCCCAAAAACTTAGAAACTGTGAGCCTTCGCTCGATGCTGTCATAGATATAAGTGTTTTTTGCTTCAGCGGACTTCCAGCGCCCATGACGCTGGAAAATACGGTCGTTAACCCCATCGTTAGCCGCCGAGGTGGCCCCACCCGAACGGAAGGAGTGAAGACCGAACTTAGATGGATCAACCCCAATGTTTTTCAAGTCCCGTCGGAATCCATCCCGAATGCAGCTGTAGCTGATAGGCTTATCTGGGGAGACTAA

Transcript

FUN_007127-T1

Protein

Uniprot

Uniprot term	Description
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
P11627	Neural cell adhesion molecule L1 OS=Mus musculus OX=10090 GN=L1cam PE=1 SV=1
Q05695	Neural cell adhesion molecule L1 OS=Rattus norvegicus OX=10116 GN=L1cam PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0043025	Cellular Component	neuronal cell body	Interproscan
GO:0050808	Biological Process	synapse organization	Interproscan