Gene detail

Detailed information of FUN_007141-T1 in Acropora pulchra

Genomic Location: ptg000001l:20923988...20933869
NR annotation: XP_029180849.2, pre-rRNA-processing protein TSR1 homolog [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_007141-T1

ATGGAAGTTTTTCTCTCATTCAGTTCTCAGCAACTCAAGCAAAGATTTACCTTCTATAAGTTAAAGTATGGAGACCTGTATTCTGTGCTGGACGCTGTAAAGGTTGCAGATTCTTTGCTGTTTCTTCTGTCAGCAATACATCCAGTTGATGCTTTTGGGGAAAAGTGTTTGTCTTGCATTTTTGCCCAAGGTTTACCCACACCATTTCATGCATTTCAGGGTTTGGATCAAATACCAATTAAGAAGCAAAATGATATGAAGAAAAATTTGCAAAAATTGGTGGAAAAATGGTTTCCAAAGGATAAGATTTACGGACTAGATACACCTCAGGATGCGCTTGTGGCCCTGAGGCTAATCTCTAATCAACAGCAAAGAGTCATTTATTTTCGGGACAAGCGCCCTCACATGCTTGCTGAACACATCACGTATGAACCAAATAATGAAGTGACAGATGTCCCCAGAGGAACCCTGAAAGTTTCTGGTTTTGTTCGAGGGACGACTATGAGTGTGAATAGATTGGTTCATTTGCCTGGCTGTGGAGATTTTCAGTTGTCTCAGATTGATGCTCCGTCCGATCCGTTTCCTTGGCAGAAAAAGAAAAGTTCTACAAAGAAAGGAAAAGGAGAGTCCATGAACCTGGACAGTGAAGAGGTTGTCAGTACAATGGACGAAGACGTGAAAGTACTGGCTCGAGCTCACCCGTCCTTGCAGCAGTCGCTCCAATCAGAAGTAGAACCTGACGCGATGGATGGAGAACAAACATGGCCGACGGAAGAAGAACTGAGACAAGCAGAGGAATCTCTCAATGAAAAGAAAGTTGTTAAGAGGGTACCCAAAGGGACTTCGGAGTACCAGGCAGCTTGGATTATTAACAGTGATGACGAAGGCGATAATGATGAAGACGATGACGACGATGATGACGATTATGACAATGAGCTGCGCAAGGAAATTGCACAGAACAGCGACAGCGATCAATCCATGAACGATAATGATGAAGAGTATGAAACAGTGAGTTTGGCTGCGACAGAGACAGATGACAGTAGATACGATGAGAAACTTGATGTCGACGAGGATAGAGAACAACTGGAGAAATTACGGGCCGAAAGGGAAAATGAAATGTTCCCAGATGAAATTGATACTCCTCTCGATCAAGCTGCTAGAGTAAGATTTCAAAGGTACCGTGGTTTGAAGAGTTTCCGGACATCGCCTTGGGATCCTAAAGAAAATCTACCGTTTGATTACGCAAGGATTTTCCAATTTGAAGACTTCAAGAGAACGAAGAAACGCGTACTGGAGGAAGAAGAAATCGATGGAGCAATGCCCGGCTGGTATGTTTCCATCTACATAGCAAATGTGCCGCATTCTTTTATGGATTCGCATGATCCCATCTCACCTCTGGTGATTTTTGGTCTTCTTCCACACGAGCAAAAGATGTCAGTTGTCCATTTCCTGGTTCAGAGGCATCCCACATTCAAAGAGCCACTGAAATCCAAGGAGCGGCTTATTTTTCATTGCGGTTTCCGAAGGTTCACAGCTTGCCCAGTGTTTTCTCAATACTCATTAGCTGATAAGCACAAGTTTGAGAGATTCATGCCACAGGAAGGAGCATTCATGGTTACAGTATACGCACCCATTATGTTCCCGCCTGCACCACTTTTGCTGTTCGCACAAGATAAACACACAAGCTGTCATTCTCTCGTTGGAACGGGCTCCCTTTACAGAGTCGATCCAGATAGAATTGTTGCTAAAAGAATTATGTTGAGCGGGCATCCTTATAAGATCAATAAACGATCAGTGGTTGTACGCTACATGTTCTTTTACAGAGAGGACATCCAGTGGTTTAAGCCAGTTGAGCTCCACACCAAGCATGGAAGAAGAGGTCATATCCGGGAACCTCTAGGGACACATGGACACATGAAGTGTGTTTTTGACGGTAACATCAAATCTCAAGACACTGTTTGTATGAATTTGTACAAGCGAGTGTTTCCTAAATGGACTTACGAGCCTACAGTTATGTCACCGCCACCAGAATCTCCGAAAGACGACAGTGATGGCATGGAGATATAA

Transcript

FUN_007141-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SWD9	Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus OX=10090 GN=Tsr1 PE=1 SV=1
Q5XGY1	Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis OX=8355 GN=tsr1 PE=2 SV=1
Q2NL82	Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens OX=9606 GN=TSR1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003509 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08142 all species →	AARP2CN	AARP2CN (NUC121) domain	Domain	Interproscan
PF04950 all species →	RIBIOP_C	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007034 all species →	Domain	Ribosome biogenesis protein BMS1/TSR1, C-terminal	Interproscan
IPR012948 all species →	Domain	AARP2CN	Interproscan
IPR030387 all species →	Domain	Bms1/Tsr1-type G domain	Interproscan
IPR039761 all species →	Family	Ribosome biogenesis protein Bms1/Tsr1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12858 all species →	RIBOSOME BIOGENESIS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000479 all species →	Biological Process	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0034511 all species →	Molecular Function	U3 snoRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14799	TSR1; pre-rRNA-processing protein TSR1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.