Detailed information of FUN_007142-T1 in Acropora pulchra

Genomic Location: ptg000001l:20934464...20936332
NR annotation: XP_029180849.2, pre-rRNA-processing protein TSR1 homolog [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9VP47Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster OX=7227 GN=Tsr1 PE=1 SV=1
Q2NL82Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens OX=9606 GN=TSR1 PE=1 SV=1
Q5SWD9Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus OX=10090 GN=Tsr1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003509 (this species only)

 Pfam domain
No Pfam domain signature was detected for FUN_007142-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR039761
all species →		FamilyRibosome biogenesis protein Bms1/Tsr1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12858
all species →		RIBOSOME BIOGENESIS PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000462
all species →		Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0000479
all species →		Biological Processendonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003924
all species →		Molecular FunctionGTPase activityInterproscan
GO:0005525
all species →		Molecular FunctionGTP bindingInterproscan
GO:0030688
all species →		Cellular Componentpreribosome, small subunit precursorInterproscan
GO:0034511
all species →		Molecular FunctionU3 snoRNA bindingInterproscan
GO:0042254
all species →		Biological Processribosome biogenesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_007142-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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