Detailed information of FUN_007144-T1 in Siderastrea siderea

Genomic Location: contig_5:9856926...9863705
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_007144-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR042847
all species →		FamilyEF-hand calcium-binding domain-containing protein 12Interproscan
IPR011992
all species →		Homologous_superfamilyEF-hand domain pairInterproscan
IPR002048
all species →		DomainEF-hand domainInterproscan
IPR018247
all species →		Binding_siteEF-Hand 1, calcium-binding siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47225
all species →		EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_007144-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_007144-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
37TPM > 0
7Conditions
416.5Max TPM
47.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 9 60.32 330.76
holobiont · low.pH Control.temp 20 8 46.27 268.87
holobiont · control.pH_high.temp 20 9 71.78 416.45
holobiont · control.pH Control.temp 19 5 19.58 116.92
Whole organism 4 4 12.44 16.44
unannotated 1 1 11.52 11.52
live coral tissue/skeleton 1 1 7.36 7.36

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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