Gene detail

Detailed information of FUN_007180-T1 in Acropora pulchra

Genomic Location: ptg000001l:21315483...21327268
NR annotation: XP_029204747.2, malate synthase-like isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_007180-T1

TCTTTTGAGAATAATCATTATACACCTAATAATTGCCTTTAGATTAGAGTACCTTTTTTGAAGTATCAATTTGATTTTGTAAAAACGATGAAGATGCTGAAGCAGAGGACCAGACGAAAAATGGACTTGAACAGTTCTGGTGAGCTTCCATCCTTTCTAACACATAGCCCAGAAGTTCAAGATGAAACCTGGAAAGTTTCACCTGTACCACAAAGACTTCAGTGCAGGACAGTGGACCTGGGAGACATTTCACCTGCTAATACTGAGCTCTTTAAAAGGGCTTTGAAGTCATCTGCTTGTGGCATTCAGACTGACTTTGATGATGGTCATTGTCCTTCTTGGTCTAACCAGCTTCTTGGTCTCTATAATATCTACCAGTTTGTGCATGGCAAAATGACAGGAGTTCCTTTAATTTCTAGTGCTCCAGTGATCATGTTACGTCCAAGGGCCTGGAACATGCCGGAACTTAATTTGATGGTTGATGGAAGGGTCATACCAGGCCCATTGTTTGACTTTGGTCTTCACATGTTCCACAACAGTAAAGTCATGATGAAAGACAGGAATGGGCCATTCTTTTATTTACCTAAGCTTGAAGGATCTAATGAAGTTAAATTGTGGAATGATATCTTCATTTGGACTGAGCAAAAGCTTGGTTTGCCTTTTGGATCCATCAAAGCTTGTGTTCTCATAGAGAGTATCCTCTGTTCTTTTGAGCTGGATCAAATCCTCTTTGAGCTTCGGCACCACTCTGCTGGTCTCAACTGTGGCATGTGGGACTACTCTGCCTCCTTTGTCAGTAACTTTGGAGATCGGACAGACTTCATCCTTCCTGATCGTAAAAAGTATGTTTCAATGGACAAGCAGTACTTGAAGAGCTATATGGACTTAGTGATCAAGACATGTCATGCACGGGGCTGTCATGCAACAGGTGGCATGGCACCAGTTGTGTTACCACAAGGTAGTTCACAGCGTCAACAAAGCATTATTCAGAGTGTTTGCCAAGCCAAACTGAAGGAAATACAGGCAGGAGTTGATGGAGTTTTAGTTTTTGATCCCAACCTTGTAAAGCCCTTGCAACAGTTGTGGAATTCATACGTCTATTTACCTCACCAACTTCATGTCAGCCGCTCTGATGTGTGTGTTTCCAGGCAGGACCTCCTTCAGCTACCACAGGGGGAATTCACTTTGGAAGGTTTACAGTACAACATCGTTGTTGGAATTCTGTTCATAGATGCTTGGTTTAGAGGTGAAGGGCTGTTTGTTCTCAATGGAGCGGTTGAAGATTCCGCTACCGCTGAAATTTCAAGATCACAGGTATGGCAGGCAATTCGACACAGATGTCAGCTTGAGGGAGATGGACGGACGGTGACCAAAGAGCTTTTTGCTAAGGAAGTAAAGCGAATTACCTCTGAGCTTGTTCGTAAGAGAGCTAAAAATAGAGCGGATGCAAACAGATTTGGGACGTCTGCTCAGATTTTTGGGGAACTTGTTTTAAAACGAGATTTTCCGCAGTTCATTACAACATTTTTATATGACCATGACAAGTTTAAAAGTACGGTACCGTAGCGAGACGATTCCTCTTCACCGCATTCTTTACTAATTGTCGTCGTTGGCATCATCATTATTGTTTAATCACGAAGAACCAATCCATTGAAATGGTCGTGCGTTGTCACTACTAAATAGAATTCGCAAGCATACATTGAACTACCAACTATAAACAAAAACAAAAACGATCAAGAGTCTAATATTAAATGTAGTGCAATAAGTAAGAAAGTAAATACGCAAGTAAATAGGGTATTTAGCGAAAGTCTTCATTGGAAAGAGTCGAGAACAAACGTGTTTAGATCGTAGTATCATTAATGAAAAGAAACCTGAACGACAGTAACTAACAAATAGCCATTGATTTATATGTAATTTATGTGTAAAATGTAAAAATTAAACGTTTATCAAAACTCGCTGGTTAGACGTTCAGGTCTTAAAATTTCAGGTCTTACCACGCTGTTGCTTGAATAGAGTCGACCTTGTGCTCTGCTTTGCAGTTCAAATTTGTCTTTCCCGTATATGATTGTGCATGAATATTTTTGTACTGTCCATGGTTCGGTTACCACATGTGATTGTGAAATAAATAGCTCATGTTCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P95329	Malate synthase OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=mls PE=3 SV=2
Q8T2K9	Malate synthase OS=Dictyostelium discoideum OX=44689 GN=masA PE=2 SV=2
P28345	Malate synthase, glyoxysomal OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=acu-9 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002008 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01274 all species →	MS_TIM-barrel	Malate synthase, TIM barrel domain	Domain	Interproscan
PF20659 all species →	MS_C	Malate synthase, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044856 all species →	Homologous_superfamily	Malate synthase, C-terminal superfamily	Interproscan
IPR011076 all species →	Homologous_superfamily	Malate synthase superfamily	Interproscan
IPR001465 all species →	Domain	Malate synthase, TIM barrel domain	Interproscan
IPR006252 all species →	Family	Malate synthase A	Interproscan
IPR048355 all species →	Domain	Malate synthase, C-terminal domain	Interproscan
IPR046363 all species →	Homologous_superfamily	Malate synthase, N-terminal and TIM-barrel domains	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42902 all species →	MALATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004474 all species →	Molecular Function	malate synthase activity	Interproscan
GO:0006097 all species →	Biological Process	glyoxylate cycle	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_007180-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.