Gene detail

Detailed information of FUN_007197-T1 in Siderastrea siderea

Genomic Location: contig_5:10385916...10409328
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_007197-T1

atgatgatagtgatgatgatgatgatgatgatgatgatttataCGACTTCCCTAAAGACGACTGCGTGAAAGACTAGTTGTCACCCGACCGAGGGCCTGAGTGTCATCACCAGGACGGATCTTCCAGGTTTCCAGGAATGATTTatgaaaaaaagtaacttaTCGATCGTTTGTATCAAACTCTGTCGTCAGTGGTTAAAGTAAAGTATTTAAATCTAAGACAAAGAGGGCGACTCCCACTTCGACGCTGCCCCACCCACTCCTCTCTTATATTTTGGTTATGCTATGAATTATGGGTAATgtgttttccaaaatggcggctttctTGGCCGTATAAAAGAGCAAAAATATATATGATAGTTCTTCCTCAAATTATGACATGTACAAGTCATTATACGATTACGTAGGGAAAGATAAAGGAGCTCTGCCTGTCCGTGCAGGAGAACAATTTCGTTTTATCGAGCGCCATGACAAAAACTGGTGGAAAATGCGTTCTGAAAACGGTTCAGTTGGTCTTGTTCCTGCATGTTACATGGAGGCTGTTGATAGCGAAAAGGTTGACCCAAGTGAAACCCTAGCAGTCCTTGAATCTGTAGACCGAGCCATTGAAGTCATCCACATACAAGCAACTAATGCTGGAGGTATCTACACTCATGAACAGAGAGCTCATTTGAGAAAATTATTAGAACGCAGAGCAAGCCTCCTTTCTGGAAAGTCATCTCCTGCTAGATCACTAACGTCTTCAGACGTCTATCATGCTGGAGCAAAAAGCAAAACTGAAGATGCAGCACAAGAACCACCAGCACAGCCTCGCCGCCCTGCACCCACACTACCACCTGACAAGGAcaagaaggaaaaaaagaaggaatCAACCAAGAGACGGCCGGCACCTGCAGCCCCTGTTTCTACTGCTAAACAAGCTGATGAAACAAAAGGTGAAACCTCCTATCAGGAATGTCAATCTACCCCTCTACCGCCTGCTGTCCCCCCGAGATCTGACCTTGAACCTGTTAAAGTACGAGCTGGACTTGCTGCAGAGTTACTAGAACTTCTGAGAATCAATACAGGTCTGAGTTATGACAAGTCCTATATTGCAGTACAGACAGTGGTATCTCACATTCAAGATTCTGTTCCAACAATATCAGATGTTACAGCACAGATATTACAAGATATTGTTCATCAAAAGGAATCTCGCAGTGAAGATGAGGAAGCCTTGCTTCAATCTCATGATGGCCAGCAGCTCATAGGAATTCTTGATGAGTTGACAGAACACAAGGAGGATTCACAGCAAAGAACCTGGGCTGTGCATGAAGATGAAGGAATTCTTCACAAGCTGCTCAAAGACCTGCTTAGTATTTTGCTTGACGCCGATCCCTCTGTCTGCCGAGCAGTACTGAGGCAGGATGATTATGAATACATTAATATGCTTGTCGTCTACTTTCAAATGGAAGAGAGACGTACACTGCGTCAGCAGTTGGTTGAAATATTTGGCTGTATATGTGGCTTAGAGAAGGAGCTACTGTCTCAGTTGCTGTGTTCTGTCCTGCCTACTGAACTGGCAATAGACATCATGAACAGGAAAAATGATCCTGTTATGCAGTGCCACTGTGCCGTGCTGTTGACCATGATATTTTCTACTGGAGAATCAGTTCCATTCACCCTTTATGATCAGATAAATCAATCATTTGTGGATTTTCTTATTGATGCAACTGAAAATGCAGCAGATGATGAAAAAGGTGAACAGCTTGTGGACACATTTGTACCTCTCATCCTCGCATTCAACCAACACTTTTTAGATTTTCAGAGCAATATTGTGATGAGTGTGTTAGCTTCTCGCAGAGTTGCCAAAACACTAAGTGAGAAAATCATGCTACTGATCAATAGAGAAGAGGACCCCACtgaaatgtttccatatccaaGAGCCTGCCCCAACTCTGTGCTCAAGTTTGTAACTGACATCTTTTCTTCTCGAGACACATCTGACTTTTTCTACACAGCGGATATGAAGATACTGATAGAGATTGTCCTGCGGCAGTTGGCAGATCTTTCTCCTGGTGCAGGGATGAGAACAGAATATATATCTTTACTCCATCAAATCCTGCTGAATTCTAACTACAGTGAACACAAACATAAAGCAAGTGAGCTGCTGGTTTGTCTCAAGAGGATCAGCAAAGAGGAAGAAAAGGAGAGCGAACAGGACAAGCTCATTGTGCAAGAAATActcaaaaactccaaaaaatatttttaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF09431 all species →	SPIN90_LRD	SPIN90/Ldb17, leucine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR030125 all species →	Family	SPIN90/Ldb17	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR018556 all species →	Domain	SPIN90/Ldb17, leucine-rich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13357 all species →	SH3 ADAPTER PROTEIN SPIN90 NCK INTERACTING PROTEIN WITH SH3 DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0071933 all species →	Molecular Function	Arp2/3 complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_007197-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.