Gene detail

Detailed information of FUN_007237-T1 in Siderastrea siderea

Genomic Location: contig_5:10865064...10885110
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_007237-T1

ATGACGAGTAGCGGGAAGAAAGGCAAGGCGGCCGTGCTTGAGTTTGATACTCAAACCAAAGAGGTGCGGCAGATTCTTATTGAGCAACTAAAATGCTTTGACAGCAGAACAGAAGGCAAGGTTCTGTTCCTTGCAGATCTCCAAGAGTTTTTTAGGAGACTATCAGAAATTGAGTTGGATTACTCCAGAAACCTTGAGCGGCTTTCAAGGATGTATTTGGACAAACTACAGAGGCATAAAACTCAAAGaaaAGAGAAAGGGACAACAATGGATTTATGGCAGCAAGTTCTCATTGAAACAAAGAACAAATCTAAAATGCATCTTGGTCTCAGTGAGAATGTCTCTAACAATGTTGTAAATAGATTCATGATTATCAGTGAGGACTGTCAGAGAATAGCTAAAAAGTGTCGGGAAACAGCAACTACTCTTCAAGAAGAACTTCAGAAGTCAGTGCAGGAACTCAACAGGCGACTCCATCGCTATCACTCTATGGCTTTAGAAAGCAAAACTGCAGAACAGAAGCTGCAGAAGATGGAAGATTCACGGCGGaagaatgaaaaaatggccAAGCAATTTGAAAAGcatcAACAAAAGTTTGTAGAATGCAAAAAGAGGTGTGTCAAGGCGAAGAATGATTATGTCTTATCTCTGGAGTCTACAAACCGCTTCTTGGAAAATTATTATAGCAAGTTCCTTGGTACTTTGGCAGATGGTTATGACACCAATTACCATGATTCCTTCAAACGTGGTGTAGAAGCATATGTGACTGCTGAAGGTAACCTTGCCAGTGCAACCATTCAGTCAGTGAACAGCATACGTGAGGGAAAGCTCTCTGTGGAAGCTGATAAGGACAAGCAGTACTTCTTTGAAGACAACCATACTTCACTTGTACAGCCATTTACATTTGCTTATTTGCCATATAATGACGAAGAGCTGAATCAGGTGTCACCTCAGCAGACAGATGTGATAGAACACCATTATAAAGTGTATGAAAGGCTCCAAAATATAAGAGCTGAAACAGAAGAGATTGACAAGACAGCAGAAGCCACTTCGGATGCCCTTAATGAAATGTACCGTCAGTGGGACAGTGAGATGATGAGGATGGCCAGTGGTGAAATAGACAGTGCCAATGGTAGTGCAAGTTGTGCATCCATTAAGAACAGCAGTGAAGACCTAGAAATGTATTATATTGCGaaaaTGAGAGAACTTATTCTTACAAGTAGCTTGAAAGTCAGAATGGAAGCTGAAAATGACATGCTTACAAAAACACTGGGAGAGGTAACTCCAGACATAGTCGGTGCCAGGCTTAAAAGGCCACATCTGGACATGTCATCTAAAGAAGCTTCAGCTATTCTGGACTCTGTCCATAAGAAGACAAAAGTGTTTGGTTGTAACCTGGAAAATTATTTAAATATTACTGGGCGAGAAATTCCTGAAGTAATAGAAAGTTGTGTTAAATTTATCAAAAAGTTTGGTCTGGACCATCAAGGAATATTTCGCTTATCAGGATCTACAACGGAAATCAATGACATGAAACAGTTATTCGAAAACGGTCGTGATCCTTTAGCGGGGCTGAATCACTGGAAAGACATCAACGCTGTAGCTGGATTACTAAGAGTTTACTTCAGAGAGCTTGAAGATCCTCTTTTTCCTAACTCACACTATCAGGACTTTATCAACGCCAGCCTGTCGAGCACAGTAGAAGATGGTATTAGAGAGTTAACAAATGTTCTCAACAGTTTGCCTGAGGCTGTGGTTCAGGTTATGAAGTATCTGTTTTCTTTCCTCAGCTTAGTTGCTCAACACAGCGATGCCAACAAGATGGACGCTCACAATCTTGCAGTTGTATTCGGTCCAACGGTGTTCCGCATCCCGTCTGAACAGGACATGATTGCttatcagagtcaagtgaatggCATGATAGAACTGCTTATCAAGCACTGTGGTGAGGTGTTCCCAGGCTCTGGAGAGTCTTTGCCTGCTCAGCTGTCTGAGACTGAAGAGAGTGATAGTGAGGAAGACTTTGAGCAAAGAGACGCCGAAGCACTGTTCGATTACTCAGCTCGTTCGTCCAAAGAACTCTCCTTCAAAAAGGGTGACATCATCCGAGTGTTCAAGCGGTTCAATACGGACTGGTGGGACGGGACCATCAATGGCACGGACGGTTTTGTCCCCGCCAAATACATCCGTATTCACACAGATGACAATGACACTGACATTACAGACGGTGAGGCAAACACTTCAATTCCCGGCGAGTTGTCACCGTCTCCAAAGATATCCGGTACAATGGATAGACCGAAGGACTTGAATGTGCCTCCAAGGATTCCTAAGCGAGAGGGCTCGCTTAAGGAGAGGGATAGTGTTCCTTCGCCCACCTCTGAACAGGCGAGCCTCGTAGGAACAAGTCCCAAGCCACCGTCTTTTGGGACGTCTTCGTTTAAGAAGTCGGCAACAACAAGTACACCAACGTCGTCGCCGTCAACAGCcgcaggaggaggaggagggccTCCGGCGATCTCATCTGAGGATATTGTAAAGCGCCAACTGATGCAGCTGCGGAAAGCTCCAAGGGAAGACAAAGAGACTGACAGCTCTGTTGATAAAACGCCTGAGCAGCCGGCATTCAATATGCCGCGACTCCGCAGCATTTCACCCTCCAGAAAATCAAACTTGTCAAGCCAAGAGAAAGGAgaagaagataaaaaaggagGGGAAACGCCGGAAGCACCGGGAAAGGAAGAACTCCGCAGATCAGGGGAAATTATCTGGCAACCAAGAGGAGAATCCCCTGGGAATCACACCCCACCTGGCAGTCCTCGGACTACAACGACGCCAAAAGTTCCCCCAGCTGTCCTCCCAAAGCCCAAGCCAGGCCGTAACCCTGCGCCTCCATTCCGTAAGAATTCTGATGATTTACTAGCGTCACTACAAGCAGCACAATCTGTACGAAGCCACCGGGGAAACTCGACTGGGGAAGATCCAAGAAAGAGCAGGGGGTCCTTAAGTGGGGATGATACTGCCTTTtaa

Transcript

FUN_007237-T1

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00611 all species →	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR001060 all species →	Domain	FCH domain	Interproscan
IPR051627 all species →	Family	SLIT-ROBO Rho GTPase-activating	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR031160 all species →	Domain	F-BAR domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14166 all species →	SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030336 all species →	Biological Process	negative regulation of cell migration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07526	SRGAP; SLIT-ROBO Rho GTPase activating protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.