Detailed information of FUN_007303-T1 in Siderastrea siderea

Genomic Location: contig_5:11799619...11812316
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04921
all species →		XAP5XAP5, circadian clock regulator C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048337
all species →		DomainFAM50A/XAP5, C-terminal domainInterproscan
IPR007005
all species →		FamilyXAP5 proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12722
all species →		XAP-5 PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006325
all species →		Biological Processchromatin organizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_007303-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_007303-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
19TPM > 0
7Conditions
117.8Max TPM
11.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 8.19 63.15
holobiont · low.pH Control.temp 20 2 9.63 117.77
holobiont · control.pH_high.temp 20 5 12.86 99.27
holobiont · control.pH Control.temp 19 3 12.51 117.03
Whole organism 4 4 20.70 25.84
unannotated 1 1 24.59 24.59
live coral tissue/skeleton 1 1 27.28 27.28

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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