Gene detail

Detailed information of FUN_007452-T1 in Dendrogyra cylindrus

Genomic Location: contig_8:8318383...8344834
NR annotation: XP_020617698.1, nuclear pore complex protein Nup155-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_007452-T1

ATGTCTGTAACAGTGGGAGCAAGCTCCCTGAGTTCACCTGTCACTCCAGAAGCGCTGGAAAACGCCGCCAAGGAAGTTGATCGCCAACTGGCAGCCGACAGACAGTTTCCTGAGCTCTCAGAACAGATCAACGCCTCGCAAACTCTTACAACCTTCAGTGGAATGAATGACTATGACTATCCATCATTGTCGTCACCGTCTGTTGGCTTGGCTGGTATGGAACTCATCAGTCTCCTCAAAAGGGTTCCCCTTCCTGCAGAGCTGGTGGAACAGTTTAATTACATGCAGTGTAACTGTATGATGGGACTTTTCCCTGAGATCAGAAGGGCGTGGCTCACCATTGATAGTAATCTTTATGTTTGGAATTATGAAGATGGGAGTGATTCTGCTTATTTTGATGGCTTGGATGAAACTATTCTCTGTGTAGGATTAGTAAAAGCTAAGCCAGAAATTTTTAAAGAAGAAGTGAAATACATTTTATGTCTTACTACACCAATTGATATTGCACTGCTTGCTGTAACATTTACTTCAAAGAAATTGGGAAACCTTGGTCATGATGAGTTTGCCGAGATGCACCTCCATCCCAATCCAGTATATTCCATCCCATCTGATAACGTTTACATGTCATGTATGGCTGGGACACAATCAGGACGAATTTTCCTTGGTGGCAAGGATGGCTGTGTGTATGAAGTTGCTTATCAGACTGACAGTTGGATTCCATGGAGAAACTGTCGTAAAGTGAACCATTCATCTGGAACATTATCATTCCTTGTGCCGTCATTTCTAAGTACTACTTTCAGTGGTGAAGATTCCATAGTCCAGCTGGCTGTTGATAATACAAGAAACACTCTCTACTCTCGCTCAGAAAGAGGAACCATTCAGGTTTTTGATCTTGGCATCCATGGAAATGGAATGTCACATGTGGCATCCTTAACTCAGGACAGAATTACACACAAAGCCGAGTCAGTTGCTAGaacAACAATTGATCACAATCAGTTCAGACCTATTGTTCACATTGCACCAATTCCAAGGCAAGAATCAAAAACTGTTCATCTGGTCGCAATCACTCAGTCTGGAGTGCGACTTTACTTCACTACAACAACTGTCAGGGCTCCTCTGGAAAGACCCAATAAACTACAGCTCATCCATGTAAGGCTGCCACCGGGATTTGCTCCATCGGCAACTTCACAGAGACCTTCCCAAGTACATGCAGCTTTCTACAGACAAGGCATCTCATTGATGGCTGCATCGCAGACTGAAGAGATTGACGTTCTTTGGGGAATTAGCCCTGATCCATTTCCTTTTCAATCTCCTCTCAAAGAAATGCAGGTAACTGTCCCAATGGAAGGAAGAACATGGTCTTTGAGTGAAGTACCTGAATTTGGAAGTAATATGCTCAGCCATTGTCCTATAATCAGTGATCAATGGCTGGAGCCACCGGCAGTTGTCAGGCAACATGCTTCCTGTCAGAGATCTTTTGTTGCTCTCAGTTCTCAGGGAAGCTATCTATTTACAACTTATCGCCCAGTTGAACAACTTCGACAGTTATTAGTACAGAGTCAGGGTTTTGACTCTGACTCAGTACGAGCTTTTTTCAAGCTTTATAAGGAGGACCAGGCATGTGCAACATGTCTTGTTTTGGCTTGCTCTGCACAGGCATCCCAACATCAGGTTGCCGAGTGGGCCACAAGAGCTTTTTTCAAATATGGAGAGTCCATGTCCCACCACCCCTCCCCTGCCAGTGTAGGAAGTCACCCTACAGAGACTAGCACCAGCCTTGGTGGTAGCTACTTAGCCTCCCCAGGAGGGAGGCCAGGGTATGGCAGTTCTGGGTTTGTGACATCAACACCTCAGTATGGCGGCATGGGGCAGGCAGTGGTGAGAGCCGAGCTGACAAGATCCAGTAAACATGATGGACTGTGCCTGTACTTTGCAAGAATCCTTGAAACTATCTGGGATTCAAGACTAGTGTTTGAAGATTTCTTTATACCTCTTCCTTCGGAACCACAACAGCCAACACCAGTGTTGAGGAGTGTACATAATGTAGAGCAGCTTGGATGGATTTTGGAAAAATTACGACAAATTCAAACATGGATGGAACAAAATCTGCGGTTTATGCTTCCTAACATGGAAGGAGGCTTCCCCAGAGTTCCAATGGCTGGAGTTCAGCCACTTCTTCAACAAACACATCAAGCGTCAGCTGAAGCACTTAATGCTGAAAGGAACTTTGTGATTAACTTCAAGTCACTGATAGACCGGTCTGTTGAGACTCTGTGCTTGTGGCAAGTTCTTAATGAACACAATTTTGAGGACGTTGTACTTCATCTTGACACTGTAATAAGAGATCGTTTGAAGCATGTCAAATTTAGAAACCTAGTAACTGCTGGACAAGAGATTTGCAGTGTGcttatttcatcattaatgcATTGTTATCTGGATGACAGTGCTTCTGTCGATGCCATAAGTGAAAGATTGAGGGATGTGTGTCCAAGTTTATTCAGCAATGATGATGCTGTGACCACAAAGgcAGGTGAACTTCTAATGTTAGCTAAAAGAAGCAGAGACAAAGTTGAACAAGAAAACACCCTCAAAGATGCACTTCAGTGTTATCGACAAGTGACCCATCAAATAAATCTAGAACTAATATGTTCTTTGTTTGAATCAGTGAGATTCTATGAAGGTGTGGTGGAGTTATCCTTGTATGCTGCACTCAAGAGGGACCCCCAGGGGCTGGCTTTACACTTCTACAGGAATGGGGAGCCACGTGGTGATGTGCAGGGAGAAGAAGCATTGATTGCCAGACAACAGTGCTACAAGTGTATTCTGGACAGTCTACAACGCCTTCTGGTGATGAAAACAGCTCCTTCCCAGTCTCCTGGTCGACCAACACGGCCAGGACCTCCACCCACTCCTGATCCCAATGCCTTGAATCCAAATGATGCCGAAAAGCTGATGGAAGAAGTGTTGTCCTATTCACTGTCCTATGGAGATGAATTGTGGCATGTTGTATTGTATCAATGGTTAATTGACAATGCACTAACAGACAGGCTATTGGAGATCAAATCTCCACACCTGGAGGAATTTCTCAAAAGATCGTCCACACAACAACAACCAGGTGAACTAAAGATCTTGGACTTGCTGTGGAAATACTATGAGAAAACAAAGAACTACTCAGCTGCTGCTAGAGTTCTCTCTAAACTGTCTGAGAAAGAAagCCCTGAAGTGTTGCTAGAATCAAGATTGGAGTACCTGGCTCGTGCTATAATGAGTGCTAAAAGCTGTAATCTGAGGACTGCTGGCAGTGGTGAGGGAGAGTTCTTACACGAATTAGAAGAAAAGCTGGAAGTAGCACGGATCCAGATGCAAGTTTATCAAGCTCTTGTGAAATTAAATGCTTCTAATCCATCCAGGCGCATTGATCAAGCTTTAGCTGGTTTGAACTCCCAACTCTTGGATGTTACTACGCTGTATGGAGATTTTGCTGATGAGTTTGGACTGTCTGAGTGTAAACTCGCCATTGTTCATTGTGCTGGACATTACGACCCCACCCTGATTGAAACGCTGTGGAGAGACATCATTGAAGCTGAGCTACATGATTCACTGCAGAGTTCTCCCAGTGATCGAATGGCAGTCGTTAGTAAGAAGATCGCTTACCTTGGAAAGGTGTATGTGCATTCTGAACGTTACTTTCCATTGGGCGCTATTATCCTGATGTTGGAAAAGAAGAGCGCCGAGCTAGCCTGGGACCCAACCTGGGTCTTCATGACCTTGTTAGAGATTGGTATTCCTTTCCCTGTGTTGCATAACATCTACGACAGACTCTTCAAAGCTAAGGATCCGTGTTGGCGAACACTTAACAAGCCTCTTCACATCCTTGAAGTTATTTATCACTTGTTATTGAAGTTTGTAGACACGCCTTCCCTGTCTCCGCCTCACGAAAGACCTTCGATTACAATCTCATTGTACGACGCATGCGCGACGTACTTAGTGGAATTGCAATCCAGTTGCTCACGTGACCCAGCTGTGCAAGACACGCTGGCCAAATTCCAAGGATTGCGGGCATCCCTTAAGCGCCTTCTGTGA

Transcript

FUN_007452-T1

CCGGCCAGTCAGCTCACTTTGTCTAAAGAAAATTATTCTCAAAACAACAAATGTCATGCTGTCGTAAGTTGACGTCATTCTACGTCTTTCATAATCGGAAGCCCTCGGGTGATTTCGGCATTTTCCGGTAATGAAGAAGACACGTTTCAGATTTTTATATTCTTGGGTTCTAGAGATACTTTTTTATAGTTTGATGTTCAGAAAAATGTACTCCAAGGTGCAAAGATTACGAATTAAAGAAGTATTATCGATGCTACTAAGAGAAAGTCCTTAGTCAGCAGAGTCAGACTCGTTTGGCCTCGGGGCTCGGATAATGCTCGAGTTGAACTCGGCTTTCGTACCCAGGACTATTTCCGTTGTTCTTCGGAGTGTGCGCATTGTTGTGGAGCGCTCACTTCGAAAATGTGCCGCCATGTGTGAGTTTTCAAAATGAcagaatttttaaatttaatgtGCATTTGAATCCGAAATCCGCCTTGAGCATGTCTGTAACAGTGGGAGCAAGCTCCCTGAGTTCACCTGTCACTCCAGAAGCGCTGGAAAACGCCGCCAAGGAAGTTGATCGCCAACTGGCAGCCGACAGACAGTTTCCTGAGCTCTCAGAACAGATCAACGCCTCGCAAACTCTTACAACCTTCAGTGGAATGAATGACTATGACTATCCATCATTGTCGTCACCGTCTGTTGGCTTGGCTGGTATGGAACTCATCAGTCTCCTCAAAAGGGTTCCCCTTCCTGCAGAGCTGGTGGAACAGTTTAATTACATGCAGTGTAACTGTATGATGGGACTTTTCCCTGAGATCAGAAGGGCGTGGCTCACCATTGATAGTAATCTTTATGTTTGGAATTATGAAGATGGGAGTGATTCTGCTTATTTTGATGGCTTGGATGAAACTATTCTCTGTGTAGGATTAGTAAAAGCTAAGCCAGAAATTTTTAAAGAAGAAGTGAAATACATTTTATGTCTTACTACACCAATTGATATTGCACTGCTTGCTGTAACATTTACTTCAAAGAAATTGGGAAACCTTGGTCATGATGAGTTTGCCGAGATGCACCTCCATCCCAATCCAGTATATTCCATCCCATCTGATAACGTTTACATGTCATGTATGGCTGGGACACAATCAGGACGAATTTTCCTTGGTGGCAAGGATGGCTGTGTGTATGAAGTTGCTTATCAGACTGACAGTTGGATTCCATGGAGAAACTGTCGTAAAGTGAACCATTCATCTGGAACATTATCATTCCTTGTGCCGTCATTTCTAAGTACTACTTTCAGTGGTGAAGATTCCATAGTCCAGCTGGCTGTTGATAATACAAGAAACACTCTCTACTCTCGCTCAGAAAGAGGAACCATTCAGGTTTTTGATCTTGGCATCCATGGAAATGGAATGTCACATGTGGCATCCTTAACTCAGGACAGAATTACACACAAAGCCGAGTCAGTTGCTAGaacAACAATTGATCACAATCAGTTCAGACCTATTGTTCACATTGCACCAATTCCAAGGCAAGAATCAAAAACTGTTCATCTGGTCGCAATCACTCAGTCTGGAGTGCGACTTTACTTCACTACAACAACTGTCAGGGCTCCTCTGGAAAGACCCAATAAACTACAGCTCATCCATGTAAGGCTGCCACCGGGATTTGCTCCATCGGCAACTTCACAGAGACCTTCCCAAGTACATGCAGCTTTCTACAGACAAGGCATCTCATTGATGGCTGCATCGCAGACTGAAGAGATTGACGTTCTTTGGGGAATTAGCCCTGATCCATTTCCTTTTCAATCTCCTCTCAAAGAAATGCAGGTAACTGTCCCAATGGAAGGAAGAACATGGTCTTTGAGTGAAGTACCTGAATTTGGAAGTAATATGCTCAGCCATTGTCCTATAATCAGTGATCAATGGCTGGAGCCACCGGCAGTTGTCAGGCAACATGCTTCCTGTCAGAGATCTTTTGTTGCTCTCAGTTCTCAGGGAAGCTATCTATTTACAACTTATCGCCCAGTTGAACAACTTCGACAGTTATTAGTACAGAGTCAGGGTTTTGACTCTGACTCAGTACGAGCTTTTTTCAAGCTTTATAAGGAGGACCAGGCATGTGCAACATGTCTTGTTTTGGCTTGCTCTGCACAGGCATCCCAACATCAGGTTGCCGAGTGGGCCACAAGAGCTTTTTTCAAATATGGAGAGTCCATGTCCCACCACCCCTCCCCTGCCAGTGTAGGAAGTCACCCTACAGAGACTAGCACCAGCCTTGGTGGTAGCTACTTAGCCTCCCCAGGAGGGAGGCCAGGGTATGGCAGTTCTGGGTTTGTGACATCAACACCTCAGTATGGCGGCATGGGGCAGGCAGTGGTGAGAGCCGAGCTGACAAGATCCAGTAAACATGATGGACTGTGCCTGTACTTTGCAAGAATCCTTGAAACTATCTGGGATTCAAGACTAGTGTTTGAAGATTTCTTTATACCTCTTCCTTCGGAACCACAACAGCCAACACCAGTGTTGAGGAGTGTACATAATGTAGAGCAGCTTGGATGGATTTTGGAAAAATTACGACAAATTCAAACATGGATGGAACAAAATCTGCGGTTTATGCTTCCTAACATGGAAGGAGGCTTCCCCAGAGTTCCAATGGCTGGAGTTCAGCCACTTCTTCAACAAACACATCAAGCGTCAGCTGAAGCACTTAATGCTGAAAGGAACTTTGTGATTAACTTCAAGTCACTGATAGACCGGTCTGTTGAGACTCTGTGCTTGTGGCAAGTTCTTAATGAACACAATTTTGAGGACGTTGTACTTCATCTTGACACTGTAATAAGAGATCGTTTGAAGCATGTCAAATTTAGAAACCTAGTAACTGCTGGACAAGAGATTTGCAGTGTGcttatttcatcattaatgcATTGTTATCTGGATGACAGTGCTTCTGTCGATGCCATAAGTGAAAGATTGAGGGATGTGTGTCCAAGTTTATTCAGCAATGATGATGCTGTGACCACAAAGgcAGGTGAACTTCTAATGTTAGCTAAAAGAAGCAGAGACAAAGTTGAACAAGAAAACACCCTCAAAGATGCACTTCAGTGTTATCGACAAGTGACCCATCAAATAAATCTAGAACTAATATGTTCTTTGTTTGAATCAGTGAGATTCTATGAAGGTGTGGTGGAGTTATCCTTGTATGCTGCACTCAAGAGGGACCCCCAGGGGCTGGCTTTACACTTCTACAGGAATGGGGAGCCACGTGGTGATGTGCAGGGAGAAGAAGCATTGATTGCCAGACAACAGTGCTACAAGTGTATTCTGGACAGTCTACAACGCCTTCTGGTGATGAAAACAGCTCCTTCCCAGTCTCCTGGTCGACCAACACGGCCAGGACCTCCACCCACTCCTGATCCCAATGCCTTGAATCCAAATGATGCCGAAAAGCTGATGGAAGAAGTGTTGTCCTATTCACTGTCCTATGGAGATGAATTGTGGCATGTTGTATTGTATCAATGGTTAATTGACAATGCACTAACAGACAGGCTATTGGAGATCAAATCTCCACACCTGGAGGAATTTCTCAAAAGATCGTCCACACAACAACAACCAGGTGAACTAAAGATCTTGGACTTGCTGTGGAAATACTATGAGAAAACAAAGAACTACTCAGCTGCTGCTAGAGTTCTCTCTAAACTGTCTGAGAAAGAAagCCCTGAAGTGTTGCTAGAATCAAGATTGGAGTACCTGGCTCGTGCTATAATGAGTGCTAAAAGCTGTAATCTGAGGACTGCTGGCAGTGGTGAGGGAGAGTTCTTACACGAATTAGAAGAAAAGCTGGAAGTAGCACGGATCCAGATGCAAGTTTATCAAGCTCTTGTGAAATTAAATGCTTCTAATCCATCCAGGCGCATTGATCAAGCTTTAGCTGGTTTGAACTCCCAACTCTTGGATGTTACTACGCTGTATGGAGATTTTGCTGATGAGTTTGGACTGTCTGAGTGTAAACTCGCCATTGTTCATTGTGCTGGACATTACGACCCCACCCTGATTGAAACGCTGTGGAGAGACATCATTGAAGCTGAGCTACATGATTCACTGCAGAGTTCTCCCAGTGATCGAATGGCAGTCGTTAGTAAGAAGATCGCTTACCTTGGAAAGGTGTATGTGCATTCTGAACGTTACTTTCCATTGGGCGCTATTATCCTGATGTTGGAAAAGAAGAGCGCCGAGCTAGCCTGGGACCCAACCTGGGTCTTCATGACCTTGTTAGAGATTGGTATTCCTTTCCCTGTGTTGCATAACATCTACGACAGACTCTTCAAAGCTAAGGATCCGTGTTGGCGAACACTTAACAAGCCTCTTCACATCCTTGAAGTTATTTATCACTTGTTATTGAAGTTTGTAGACACGCCTTCCCTGTCTCCGCCTCACGAAAGACCTTCGATTACAATCTCATTGTACGACGCATGCGCGACGTACTTAGTGGAATTGCAATCCAGTTGCTCACGTGACCCAGCTGTGCAAGACACGCTGGCCAAATTCCAAGGATTGCGGGCATCCCTTAAGCGCCTTCTGTGAAAAAGCTGACCCGAATGAGGTCATTTGGCTTTATATTGTGTCGAATGAGGGTCAAAACAGGGAATACCTAACAACAGAACAAGCTAGTCTCTGTAAAATGTTACAGTAAAAAGCCACTGTCAAATGATCGTTTCTAAACCTttattaaaggagctatgtcacgggatttcgcagatttttttctcaactgttcagaaattagtggtaggcaacttaacccatgaaaaacatctaacatctaaaggaagatgtggccttaatttgcggatggaaatcaaactaaagctatataATCATGATATTGATATTTTGAAGGTGCGCTGAAACAACTTGgaaagtttagccttaacttttcaagttgcacaTCAATTTCGATctaagccatccgcagccaaagacgcctgttaacagtttcagtgctctaatacttgttaattaaaaattgcccattattttaaggtttcctacgctacaaacataaattttggctgttcaaaaatctatcaaaatctgtgacaaagacCCTTTGATACCAAAAATGTTTTCTGCCTAACGCTTAAGTGTAGCTTTTGTAAAATGAACAGTATATTGTAAATAAAAGttagtaaaactttttgttCTTAGTTTCTGTGATGTGCAGTCGTATTTTCTATTGTTCCAGGTTGTATGCAGTCTTCTTTATTGTATAAAAGGGTTGTTAATATTCGTGTATTCTCGATAATTAATGTATTTGGGGAATgtagt

Protein

Uniprot

Uniprot term	Description
O75694	Nuclear pore complex protein Nup155 OS=Homo sapiens OX=9606 GN=NUP155 PE=1 SV=1
Q99P88	Nuclear pore complex protein Nup155 OS=Mus musculus OX=10090 GN=Nup155 PE=1 SV=1
P37199	Nuclear pore complex protein Nup155 OS=Rattus norvegicus OX=10116 GN=Nup155 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08801	Nucleoporin_N	Nup133 N terminal like	Repeat	Interproscan
PF03177	Nucleoporin_C	Non-repetitive/WGA-negative nucleoporin C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042537	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 2	Interproscan
IPR014908	Domain	Nucleoporin, Nup133/Nup155-like, N-terminal	Interproscan
IPR004870	Family	Nucleoporin, Nup155-like	Interproscan
IPR007187	Domain	Nucleoporin, Nup133/Nup155-like, C-terminal	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR042533	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 1	Interproscan
IPR042538	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10350	NUCLEAR PORE COMPLEX PROTEIN NUP155	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000972	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006913	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0036228	Biological Process	protein localization to nuclear inner membrane	Interproscan
GO:0044611	Cellular Component	nuclear pore inner ring	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14312	NUP155, NUP170, NUP157; nuclear pore complex protein Nup155	-	Messenger RNA biogenesis	ko03019	deepkoala