Detailed information of FUN_007479-T2 in Siderastrea siderea

Genomic Location: contig_5:14294003...14322375
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14745
all species →		WASH-4_NWASH complex subunit 4, N-terminalDomainInterproscan
PF14744
all species →		WASH-7_midWASH complex subunit 7FamilyInterproscan
PF14746
all species →		WASH-7_CWASH complex subunit 7, C-terminalFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028191
all species →		DomainWASH complex subunit 4, N-terminalInterproscan
IPR027307
all species →		FamilyWASH complex subunit 7Interproscan
IPR028282
all species →		DomainWASH complex subunit 7, central domainInterproscan
IPR028283
all species →		DomainWASH complex subunit 7, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31409
all species →		WASH COMPLEX SUBUNIT 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005768
all species →		Cellular ComponentendosomeInterproscan
GO:0007032
all species →		Biological Processendosome organizationInterproscan
GO:0016197
all species →		Biological Processendosomal transportInterproscan
GO:0071203
all species →		Cellular ComponentWASH complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K18465MRT43, SWIP; WASH complex subunit 7-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_007479-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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