Gene detail

Detailed information of FUN_007552-T1 in Siderastrea siderea

Genomic Location: contig_5:15323147...15338553
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_007552-T1

ATGTCATCGTTCTCAAAAACTCCGCATCTGTTGACAAAGGAAAAGTTGAAAAGTGCTTTAAAGGCCAATGGGATCCCACTGCCGAAAACGGATCAAAAGAAAGCTTTCTACGTTGACTTGTATTTGCAGAAGTTGACCTCTCAAAATGATGAGGAATTTTCTTCCGACGAGTCCGAAGAATTGTCAGAATCTTCTCCTATGGAAGCCAGTAAGAGACTTCTTGCCAAGCCacagcaaaagatagttatCAACAAAAGAGTGAAAGGTGGACTGCCCTTTGATGTGACAGCCTTGTCTGATGGTGACCTTGCCAGGCAGCTCAAATCATTTGGAGCCACAGTTGGCCCAATCACAGATTCCACACGTCCCCTTTATCAGAAGAAGCTTGCTAAGCTGCTGACTGAAGAAATGCAGACTCCTGCTGTCCCTCCAACTAAAGTCTCACCTAAGCAAAGAAAGGTGTCACCGCCAAAACCAGGGAGGAAGGAACATGCAGACTTCTCTGATGGGAATGATGTTGATGATGCATCAGCAGAGGAGTTGGAAATAGAGACTGTTGAAAGACGTAATTACAATCATGATCAGCAAGATCAGCTGGACTCTCCTCCCAGTGAGCTGCCTCCCCCTTCTTACAGATCAACCCCTGCAAGGGCCACGCCCAGAAAAAGAGATACTAGACAAGTCTACAATGAGAGCCGAGCTGAAAGAGCAAACAGCTTTAAGCAAACAGATTCTGTTGAAAATGTGGCAGTAGAGAAACCTGCTCAACCCGTGAAAGAAGAATCCAGCATCTGTGGCCCTCATTTTCAGATTTTACTTGCTGTTCTAGTATTCCTGTCCTTTACAGCATTTTTAGTTTATTATCTTATGGATGAGTCTCCTCATCGTGAGATAGCTGGTGGTAACCAGGCTTCTATCCAGTAAGCCAAGGGATTTTATCTTTAGGAATCTATTACAAATTGCATATCCTTAGATCTTTCCTTGCTGACTAGAGTTGAAAACTGCAGCAATTAACGAGTCTAACTTTTTAAGGCTGTAGTTGTAATCtgagtgtggccattcaaatgacagcttCTGGGCAGTTCTTTTTACAGTAGTGTTTATCGtgttgtacaagatggttctactTGTAATGTTTGAATATGTGGATGAAACCATAAGGACCATTCTAATGAAAGCTTATTTGAGCAGTTACTTGCAAATACTCAGTgcttattgtgctgtacaataGGGTTCTGATCTGTGGGTAAAACCCTAAAGTGTGTCCATTTAAATGAGAACATTTGAGCAGTATATTCTTTTGCGGTCTATTTCTTCTTTTctgctttattattttttttgtcttcccaaatttgtcaaaaactttAGGCACTGTTATCGTCGCATGTTAATCTTGACAAGTTCACTACAATTTTGGGCAGTTGTCTCCTTTGAAGCACcttgttttgttgttctttaaaGGTTCCATCATAATTATTCAGACCTAAAAAGTTTTACTTTAGTTTACACCTCTTTTCTAGTCTGTGCCTTGCAAGTATCTCGGAACTTGTCTCAAAGCTAGAATATAGATTTTTGACATAACAAATTTTAAGGCAATGAAAGTTGCTGCAAAAGTtgattttattcattttgtacCTGTAGGGTTTTGAAAGTtgctattttattttctcgttaTGTGCTAGAAGCACAAACAAACTATAAATAATGTGTTCATGTTTAGAACTCTCTAACCGAGTGGTCTTTAAATTGGCAACCAGAATGCATTATTTAAAATCAGTTGACTATCAGTCAAACACTGAAACGTAGCAGAAAGGGGACAAAATTCCTCGCTCACCTTGAAAGACAGTTTTAAAGGCACGAAGAATATTGAtagatttttttgttctttattatttttctggCAATGCCTGACAGATTTATAGTattcaaaaaagtaaaggacGTAGGTTGTTTACCCCGTTAGGAAATTTCAACCCAAGGTATTAATTCTCTACCTTTTTGTATGTTTTGTaccttttctattttttttctttaccaacGTCTAGAGTGTGGTGTTATTACTTTTTATATGATAGTAAATTGCTGCTTGTAAAACCTTTTTCTTGGTATGGTAAGGACTCGAGTTAAAGCTCTGAAATGAGGCAAGTGATGTATTTCCTTCAAGTGTATAGACTGCAAAAGTCAGTCTCTTTTTTCTCGATGATTTATGTCGATGTTTAATAATAAGGATTTGGACACTCTCAGGTCGCTGCGTCACGCTCAGAGAACTCGCCCATAAGAACGGGCTTTGGCAATCTACCAAGTGTAGCTTATCATTATTATGAAAATGGTGGGCGTTTCATTATACGAAGACGTGCTAGATAGCAAGTTTGTAATGAGGGAAAAACATATCCCAGTgtgaaaaaatgttgaaaaaatatAGCTTATGTATGAAGAGATTTTGTTGAAGGTTGCACTGAAATTAAAAAGTACATGTACTCTTTACCTATTGGTTTTAAATTGTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08198 all species →	Thymopoietin	Thymopoietin protein	Domain	Interproscan
PF03020 all species →	LEM	LEM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013146 all species →	Domain	LEM-like domain	Interproscan
IPR051656 all species →	Family	LEM domain-containing	Interproscan
IPR003887 all species →	Domain	LEM domain	Interproscan
IPR011015 all species →	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12019 all species →	LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24031	TMPO; lamina-associated polypeptide 2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.