Gene detail

Detailed information of FUN_007757-T1 in Acropora pulchra

Genomic Location: ptg000002l:4371334...4379593
NR annotation: XP_015768528.1, PREDICTED: fibronectin-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P50282	Matrix metalloproteinase-9 OS=Rattus norvegicus OX=10116 GN=Mmp9 PE=2 SV=1
O18733	Matrix metalloproteinase-9 OS=Canis lupus familiaris OX=9615 GN=MMP9 PE=2 SV=2
P52176	Matrix metalloproteinase-9 OS=Bos taurus OX=9913 GN=MMP9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000377 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF00631 all species →	G-gamma	GGL domain	Domain	Interproscan
PF00040 all species →	fn2	Fibronectin type II domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001770 all species →	Family	G-protein, gamma subunit	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR000562 all species →	Domain	Fibronectin type II domain	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR015898 all species →	Domain	G-protein gamma-like domain	Interproscan
IPR036284 all species →	Homologous_superfamily	G-protein gamma-like domain superfamily	Interproscan
IPR036943 all species →	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13809 all species →	GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005834 all species →	Cellular Component	heterotrimeric G-protein complex	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0031681 all species →	Molecular Function	G-protein beta-subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_007757-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.