Gene detail

Detailed information of FUN_007819-T1 in Acropora pulchra

Genomic Location: ptg000002l:5058815...5069383
NR annotation: XP_029187428.2, exonuclease 1-like isoform X2 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_007819-T1

ATGGGAATTCAAGGGCTACTTCCCTTATTGAAACGGATACAAAAGCCTGTCTCGATCGCTGAACATTTTGCCGGCCAAGTGATTGGGGTGGACGCTTATTGTTGGTTGCACAAGGGAGCGTATGGATGTGCGATGGAATTGGTTGAAGGAAAGAAGAGTTCTATATACATCAATTATGTCTTGAAACGTATCAACATGTTGCTGCATTTTAATGTAAAACCAATTTTAGTTTTTGATGGATGTAATTTGCCTTCCAAAGCTGGACAAGAAGAACGACGAAGAAAGACAAGACAAGAAAACAAAGCGAAAGGTTTGGCTTTTTTGCGTGCTGGGAACAGACAGCAGGCTGTGGAGTGTTTTCAGAAGTGTGTTGATATTACTCCAGAGATGGCCCTTGAAGTAATAAAGGAATGCAGGAAGAAAGGTGTGGAGTGCATTGTAGCACCTTATGAAGCTGATGCACAGCTGGCATATCTGATGAAAGCAGGAATAGCTCAGGCAATCATTTCTGAAGACTCTGATTTACTTGTGTATGGATGCAAGAAGGTGATTTTCAAGATGGATTCTTGTGGTCACGGCATGGCTGTTGATTTAGCTGATCTGTCAAAACTGACCGACTTGAAGCTTCATGAGTTCACGCAAGAGAAATTCCGTCACATGTGTATTTTGTCAGGCTGTGATTATCTACCTTCTGTCAAAGGCATTGGCTTACACAAGGCTATTAAACTATTGAGAAAGTCATCTACCATTGACAAGGTGATAAAGTCACTGAGACTGGATGCAAAGATGCAGGTTCCAGCTGATTATGAGAAGAGTTTTAAGCAGGCAGATGAGACTTTCCTCTACCAGCTTGTGTTCGATCCACTGTTAGAGAACTTAGTCCCTTTGAACGAGTTACCCGAAGGCCTAAAACCTGGTGACCTCCAGTTTGCTGGACCATCCATGTCAAGAGAAAAAGCGCTTGGTATTGCTGTTGGAAACATCAATCCCATTACAGGGGAAGTGTTGGCGGATTTCAATAGTCGTGAAACCAAGATTGTCCATCTGAATTCCAACGAAAAATCCGATCACAGCTCAGGTTCCCTCACTCCAGTTTCAACATCATCTTTTGGTCACTCGGTCATGAACAAACGAGGGAAGACTGGTTACGACGTGCAGAAAAGCCTCTCTGGACTGATGCTCAATTCGCAGCCAACTGCCAACACCAAGAAGCCTTTCTTACCACCAGGAGCGAAGAGAAAAGCTGAAGAAGACGACTTTGATGATCACTCGCTGTTTAACATGTACACTGCTGTTAAAAGAAGGCCGAAGGATTTGTTTGGTGGTGTTCCTGAGAAGTTCAAACGCAAGGCGTCAAGCCAGTGCATGGGGAGTGGAATCAAGAGATCAAAGTTCAGAAATCCTTTCAAAGTTTGCGATCAAGGGGGTGACGTCAACGAACCAGACGGAACCAGCAGGTATTTCAATCTGAGTGGAAGCCCAGAGTTACCAAAAATGCCCCCTGATGAGAGCAAAGGTATGTTGAACGGAGGCGAGCTCGATGGTGTGACGGACAAAACGAAAGATGCAGATCCTTCGAGTGCATTTAAACCAGGTGCTGTTCTCACTTTGTCAGAAGAAACAACAAAGGAAAGGTTATGTGGCAGCGAATTTGGAAATCGTGTTGAATTCGACGAGAATACTGATGACAAAGACAAAGAGAACGAACCTCTTTCTTGCGATCCGCACCACAGCAGTCAATCATCGGTCGAAATACTTGAAAGTCAAGGACACGAGCAAGGAGAGATATCAAAGGCGAAAAACGATGTTTTCCTCAAAATACCGGCTTCTCTTGAAAAGGTTCAAAAGCAAGGCGTCTTAACCACCTCAAACACTCAATTGATTTCTCCGCGATCTGGAAATACTCGCCTAAACGATCTATTCGGTTACAAACCCTCGTTCAGAACTAGAGAAATTGATGACAATGTTTCTGTTGACTCTCGAGAGAATGAAGTTGGGGCTCCTGTGAACACCATTGTGGTGGTTAATATTGAGAGTGGCTATCAGTCGGATACAGAAATGAGTACAGACAGTAACACAGCCATCTCTACACCGTCGGCGCTGTCGCGTCTCGCTGCACTGCCCTCCACGGGAAAGTTACATTTTGGGCAGGGTAGTGCTGTTGGCACAAAGACAATGAAGAAACAGATCCAACTGAAGTCTAAACCAGGGAGCCGCAGCACTGGTCTGGGAAGATGTCGGGCCATGGGACTCACAAAAAGGAAATCTGTCAATAATTTGGGGCCGGATTCAAAGCAAACTTCGGCAGCTACAGCGACTTTGTTCAGTTATTTTGAATTTGACAGACGAAAGAGACCAAAATTGGAAAGCAGTTGA

Transcript

FUN_007819-T1

GTGAATTATCCTAATTTGTGCTAATATGCTTTTAAAGGAAGGAGAACCTTATAAAACTATTGTTGAATTCGTTTTCAAGGAGAATGCAAGCTTGTAAAAACTAGTGTTTGAAGTTCTATTCCATTTGCAATTGATATGGCGTTGCAATATTGGTGCTGTGAGTATTTAAACACGCTGATGCAATTCGAATTGCTGTAAAGACAGATTACTTGTCGTAGTTTTCGGAGCAAAGAGATCTTAAAATGGGAATTCAAGGGCTACTTCCCTTATTGAAACGGATACAAAAGCCTGTCTCGATCGCTGAACATTTTGCCGGCCAAGTGATTGGGGTGGACGCTTATTGTTGGTTGCACAAGGGAGCGTATGGATGTGCGATGGAATTGGTTGAAGGAAAGAAGAGTTCTATATACATCAATTATGTCTTGAAACGTATCAACATGTTGCTGCATTTTAATGTAAAACCAATTTTAGTTTTTGATGGATGTAATTTGCCTTCCAAAGCTGGACAAGAAGAACGACGAAGAAAGACAAGACAAGAAAACAAAGCGAAAGGTTTGGCTTTTTTGCGTGCTGGGAACAGACAGCAGGCTGTGGAGTGTTTTCAGAAGTGTGTTGATATTACTCCAGAGATGGCCCTTGAAGTAATAAAGGAATGCAGGAAGAAAGGTGTGGAGTGCATTGTAGCACCTTATGAAGCTGATGCACAGCTGGCATATCTGATGAAAGCAGGAATAGCTCAGGCAATCATTTCTGAAGACTCTGATTTACTTGTGTATGGATGCAAGAAGGTGATTTTCAAGATGGATTCTTGTGGTCACGGCATGGCTGTTGATTTAGCTGATCTGTCAAAACTGACCGACTTGAAGCTTCATGAGTTCACGCAAGAGAAATTCCGTCACATGTGTATTTTGTCAGGCTGTGATTATCTACCTTCTGTCAAAGGCATTGGCTTACACAAGGCTATTAAACTATTGAGAAAGTCATCTACCATTGACAAGGTGATAAAGTCACTGAGACTGGATGCAAAGATGCAGGTTCCAGCTGATTATGAGAAGAGTTTTAAGCAGGCAGATGAGACTTTCCTCTACCAGCTTGTGTTCGATCCACTGTTAGAGAACTTAGTCCCTTTGAACGAGTTACCCGAAGGCCTAAAACCTGGTGACCTCCAGTTTGCTGGACCATCCATGTCAAGAGAAAAAGCGCTTGGTATTGCTGTTGGAAACATCAATCCCATTACAGGGGAAGTGTTGGCGGATTTCAATAGTCGTGAAACCAAGATTGTCCATCTGAATTCCAACGAAAAATCCGATCACAGCTCAGGTTCCCTCACTCCAGTTTCAACATCATCTTTTGGTCACTCGGTCATGAACAAACGAGGGAAGACTGGTTACGACGTGCAGAAAAGCCTCTCTGGACTGATGCTCAATTCGCAGCCAACTGCCAACACCAAGAAGCCTTTCTTACCACCAGGAGCGAAGAGAAAAGCTGAAGAAGACGACTTTGATGATCACTCGCTGTTTAACATGTACACTGCTGTTAAAAGAAGGCCGAAGGATTTGTTTGGTGGTGTTCCTGAGAAGTTCAAACGCAAGGCGTCAAGCCAGTGCATGGGGAGTGGAATCAAGAGATCAAAGTTCAGAAATCCTTTCAAAGTTTGCGATCAAGGGGGTGACGTCAACGAACCAGACGGAACCAGCAGGTATTTCAATCTGAGTGGAAGCCCAGAGTTACCAAAAATGCCCCCTGATGAGAGCAAAGGTATGTTGAACGGAGGCGAGCTCGATGGTGTGACGGACAAAACGAAAGATGCAGATCCTTCGAGTGCATTTAAACCAGGTGCTGTTCTCACTTTGTCAGAAGAAACAACAAAGGAAAGGTTATGTGGCAGCGAATTTGGAAATCGTGTTGAATTCGACGAGAATACTGATGACAAAGACAAAGAGAACGAACCTCTTTCTTGCGATCCGCACCACAGCAGTCAATCATCGGTCGAAATACTTGAAAGTCAAGGACACGAGCAAGGAGAGATATCAAAGGCGAAAAACGATGTTTTCCTCAAAATACCGGCTTCTCTTGAAAAGGTTCAAAAGCAAGGCGTCTTAACCACCTCAAACACTCAATTGATTTCTCCGCGATCTGGAAATACTCGCCTAAACGATCTATTCGGTTACAAACCCTCGTTCAGAACTAGAGAAATTGATGACAATGTTTCTGTTGACTCTCGAGAGAATGAAGTTGGGGCTCCTGTGAACACCATTGTGGTGGTTAATATTGAGAGTGGCTATCAGTCGGATACAGAAATGAGTACAGACAGTAACACAGCCATCTCTACACCGTCGGCGCTGTCGCGTCTCGCTGCACTGCCCTCCACGGGAAAGTTACATTTTGGGCAGGGTAGTGCTGTTGGCACAAAGACAATGAAGAAACAGATCCAACTGAAGTCTAAACCAGGGAGCCGCAGCACTGGTCTGGGAAGATGTCGGGCCATGGGACTCACAAAAAGGAAATCTGTCAATAATTTGGGGCCGGATTCAAAGCAAACTTCGGCAGCTACAGCGACTTTGTTCAGTTATTTTGAATTTGACAGACGAAAGAGACCAAAATTGGAAAGCAGTTGATGGCATCTTCTTGAACTCTGCGTTATTTAAAGGAACTTTGAATTCGAATTGAATTATGAATTTTCTTGTTATTTTTTATGTTTCAGTTGTACATTGCATAGTTTTAAAACTTCATTTTAGCAAAAGTGTATATGAAAATATAGGATTTTTGTGCTTAACCTTGTGCTGACTTTGGGCACTTCGCTTGGAATTTTACTTTCTTTTAACCGACGGACAACTCTGCATTGATGTGACTTCAAGGCAAAGTTCTCTCCTCAGACACCGTGTAGGAGGCAAATACTATTCATGCATTGTCCAGTCATGATATAGGAACTTTCTCGAGTCGAGAATTGTTGTTAAAAAAGGACCACCCTCTGATTAGCCAACCTCGTTCCCAGGGTCCTCTCTCTATTTCGAGAAGTTCGAAGTAGAGAAAGGACCCTGGGAACGAGGCTGCTGATTAGCCAGTCTCCAGATAAATGCAAGCTTCAAACACTCCCACACTTTCAGTTTCTTTTTCTAGTTTCTTTCGTTTGAGATCTTAGCTATCAGCGCGACGTTTGCTGGAAACATCGTTTTCATTCTGTCTTTGTGCTATCGTTTATGGTGACAGATAAGAGTAAGATGTTGAGATACTTTAGTTAAGAAAAGAAGATAAAGTCATGGAAATAAAGCGACGTTTAAACAAGAGAGTGAAATCCCGTAATCCTGTTTTTATATAGAAGGCCTTAGTACATCGAAGTCAAGCTTATTTGTCGTTTCAAATTTTGAAAAGCGAGAGAGTTACTATCAGCAGTTTGTAACTTACACGACCTGAATCCAAAATGGCCTCCACTTTTTGCTCATTTGTTGTTGTCGCTTTTTCTTTGTTTGTTTATTTTTTGTGCGAGTGGAATAAAGAAAAGTAAACTGTCGCCTAACAGGATAATTAATCAAAATTACTTTGGGATGTTCTAGCCTTTTTAAATATTAAGAAAATGTGGTCTTTTTGCATGAGAATTTAATATCAAACAAGTTGGTGTAGGTCGAGTTTCTATCGTAAAACGGAACTATTAGTTAATTGAATGATACTTGTGATGAAAACATCTCAGCTAAGAACATGTTTAAAACGTTTTCAGGCTTGAGTCGCAAAAAGGAAAAAAAAAAATAACCGAAGAACAGTCAGTCGTACTTCTTAAACCAGACGGGAAAAAGGGTGTATGTGGACGTCAAATTTGGATACTTACTCTGGCAGCTGTATAAGTTATAGTTCAATATTTCATATTTCCTGGTTGTTCCTGTATTTCTTGAACCTTTTTTCAACGCTGCCCCCTGTAATTTGAAAACAACTTGTATTAGTTTTGGGATTCAAAAAGATAATCCTAAAAGATGGGTATTCGAAATTTAAATTCCGTCGATATAAAATTCCGAGTGGGTATCGTTTGGTCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q803U7	Exonuclease 1 OS=Danio rerio OX=7955 GN=exo1 PE=2 SV=1
Q9W6K2	Exonuclease 1 OS=Xenopus laevis OX=8355 GN=exo1 PE=2 SV=1
Q9UQ84	Exonuclease 1 OS=Homo sapiens OX=9606 GN=EXO1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000453 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00752 all species →	XPG_N	XPG N-terminal domain	Family	Interproscan
PF00867 all species →	XPG_I	XPG I-region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019974 all species →	Conserved_site	XPG conserved site	Interproscan
IPR037315 all species →	Domain	Exonuclease-1, H3TH domain	Interproscan
IPR044752 all species →	Domain	Exonuclease 1-like, PIN-like domain	Interproscan
IPR006086 all species →	Domain	XPG-I domain	Interproscan
IPR036279 all species →	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR006085 all species →	Domain	XPG, N-terminal	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR008918 all species →	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR006084 all species →	Family	XPG/Rad2 endonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081 all species →	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0035312 all species →	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10746	EXO1; exonuclease 1	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.