Gene detail

Detailed information of FUN_007820-T1 in Acropora pulchra

Genomic Location: ptg000002l:5069556...5074505
NR annotation: XP_029187429.1, protein YIPF4-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJD7	Protein YIPF4 OS=Gallus gallus OX=9031 GN=YIPF4 PE=2 SV=1
Q9BSR8	Protein YIPF4 OS=Homo sapiens OX=9606 GN=YIPF4 PE=1 SV=1
Q6NYF1	Protein YIPF4 OS=Danio rerio OX=7955 GN=yipf4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007714 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04893 all species →	Yip1	Yip1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006977 all species →	Domain	Yip1 domain	Interproscan
IPR045231 all species →	Family	Protein Yip1/4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21236 all species →	GOLGI MEMBRANE PROTEIN YIP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0048280 all species →	Biological Process	vesicle fusion with Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22942	YIPF4; protein YIPF4	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.