Gene detail

Detailed information of FUN_007901-T1 in Acropora pulchra

Genomic Location: ptg000002l:6062985...6072069
NR annotation: XP_044174566.1, serine/threonine-protein kinase/endoribonuclease IRE2-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_007901-T1

ATGAAAGAACAACGAATAAAGCGTTTAATCCCTGAATACATCTTGTGTCTTGTTTTGTGGTTACTTTGGGGTCACACGTTGGCAACAGGACAACTCTTGAACTTAGGTGTTCACGGCAGCAGCAGTCCTTGTGATTCTGAGTGTGAATGTTTCTCCTGGGATTCTTCCAATGGAAGTAGAAGTAGTAAGAGATTCACCGTTAATTGTACTGGGATGAAATTTGGTCTGTTTCAGGGAATCTCAGTCCCGAAGAATCTGCCATGGAATACAACTGATTTGGTGGTTAAAGATTATTTTCTTAGCACTGTGAATCTAAATTCTTTTGATAATTATCGTTTTCCATTGAATCCTATGCTTTTAACTCTCGTTCTTTCCAGTTGTCATATAACTTTTTTATCTCGGGAAACGTTTCGAGCCAACTCTCTAACTTCTCTGGAGACTGTCGATCTGAGTTACAATCACGCAGAGCTGATTCAAGAAGGTACTTTCTCTCAGTTACCATCCTTAGAACTCGTCTCTTTGTCTAACAACTTCCTTGAAGAGGCTCAACAGGGTGCCTTTAGAAATCTACCAAAGGTTCGAATGATTAACTTGTCCCATAATTTACTACGTAAAATACACCCTGGAACGTTTGAGAGGGTCCCAGAACTGAAAATTCTGGATCTGTCCGCGAATTGGTTAACAAATCTTCCTTGGAAAAGTATCGCCCGGCTTACGTCGTTGAAAGTGCTTCGCCTCGAGGGCAATTTTTGGAACTGCTCCTGCGACATGACGGATATAATTCACATTAACCAGTCTTTGATTGCTGGGAGCAAGGCTGTTTGCGGGTCACCGAAATTGCTCAATGGCACTCTGTTGGAGCAACTGTCTCCAACAAACTTCTCACATTGCTTTTCTGATGAGGAATCATTCAGTCTTAATGGAAAAATAGTTGTTGCATTACTCTTTGGCGTGATTGTGATTGGCGCGATTGTCTTTCTGCCAATATGGTGGTCAAATCGACGTATTGGACAAATCGAGTTCAATGTACACGATGTTCTTGGTCATTCTGGATGTGTTTACAAAGGTAGACTTAAAGATGGAAGAGACGCTGCTATTAAGAAGTATTCTAAGGTGAACTGCAGATGCAAGGAGCTCGAGATACTGTTGCGCATGTCTGAGAAAGGCTCACCGCACCCTAATGTGGTTCAGTATTTTTGTGTTGAATACAACTGGAACTTTACATACCTAGCTCTTGAACTGTGCCATGGTAATCTCAAGACAGCACTTAAAGATTACAGTGAAGAGTTCGCCGGTTACCTTGAACCGAGAACTTGCTTTTCACAGATAGCCTCCGGGGTGAACCATCTGCATGCAATTGGAATACAACATCGAGATATTAAACCTCAGAACATTCTCTGGAAAAAGACGGACAGCGACCTGAGGTTTGTTATTTCTGATTTTGATTTGGGCCACATTACTGAGGATGAGTCGTTGCATAAGCATAGGTGTGGCTCGTTGGGATGGTGTGCTCCTGAACTTTGGAATCTTCAAGACAGGACTGATGCAGTGGATATCTTTTCACTTGGTTGTGTCTTTTACTTTGTTTTAGCAAGAGGTGACGGGCATCCCTTTGGTTCAGTTTCAAAGATGGAGGAATGTCAAAGTGCTATCATGTCGGAGGGCTATAATTTTTCTCTGTCTAAACTGCAGGACATTTATCAGGGACCTTTGCATATGACTGCTCTAGCGGAAGATCTGCTCCGGGAAATGATTTGTTTCAATCCCAACGAACGAATCAAAGCAAGTGAAATCTTAAAGCACCCGTTGATGTGGAACAGTGAGCAAATAAATACATTTTTCCATGAAATTGGGGATCGTATAAAGGATGTCAAAGATCCAGATACCGTCACTTTTAAAGAAATGTTGGAGAGTGGGGCTGGTACTGTTTTTGTTGGATCCTGGTTGGATAAGGTAAAACAACCTGCAAGGAGTGATTTGAAAGGCTTCAAAGAACGGAAAGAAGAGCTTTGTGGTCTTTTAAGAGTGGTTCGTAATAAAGCAGAACACTTTGAAAATTTGGGAGAGCAACTTCAAAAATTTTACGGTGGAAGTCGCGAGGGTGTTGCAGAGTATTATGTGGATCTCTTCCCAAAGCTTCTATCTTTTACATACCGTACCCTACAAAGGAGTGGATTAGTGTACGAAAATGGACTTATTAAGAAAAAGTCGTCGCTTATGTAA

Transcript

FUN_007901-T1

GTTGTATTTCCTCTCTGCCTAGTTAGTGGCACAGTTGAAAGAGGAGACGGCAAGCTGGTGGTATTGGGTGCAAACTCTGTCATTTGATTGATTATGCGCATGAATGTTCGCGTGGTCCAATTCTTTGGGAATTTTATTCGTAAAGGATCTTACTGGTATGCCTTAACTCGTCAAGATGAAAGAACAACGAATAAAGCGTTTAATCCCTGAATACATCTTGTGTCTTGTTTTGTGGTTACTTTGGGGTCACACGTTGGCAACAGGACAACTCTTGAACTTAGGTGTTCACGGCAGCAGCAGTCCTTGTGATTCTGAGTGTGAATGTTTCTCCTGGGATTCTTCCAATGGAAGTAGAAGTAGTAAGAGATTCACCGTTAATTGTACTGGGATGAAATTTGGTCTGTTTCAGGGAATCTCAGTCCCGAAGAATCTGCCATGGAATACAACTGATTTGGTGGTTAAAGATTATTTTCTTAGCACTGTGAATCTAAATTCTTTTGATAATTATCGTTTTCCATTGAATCCTATGCTTTTAACTCTCGTTCTTTCCAGTTGTCATATAACTTTTTTATCTCGGGAAACGTTTCGAGCCAACTCTCTAACTTCTCTGGAGACTGTCGATCTGAGTTACAATCACGCAGAGCTGATTCAAGAAGGTACTTTCTCTCAGTTACCATCCTTAGAACTCGTCTCTTTGTCTAACAACTTCCTTGAAGAGGCTCAACAGGGTGCCTTTAGAAATCTACCAAAGGTTCGAATGATTAACTTGTCCCATAATTTACTACGTAAAATACACCCTGGAACGTTTGAGAGGGTCCCAGAACTGAAAATTCTGGATCTGTCCGCGAATTGGTTAACAAATCTTCCTTGGAAAAGTATCGCCCGGCTTACGTCGTTGAAAGTGCTTCGCCTCGAGGGCAATTTTTGGAACTGCTCCTGCGACATGACGGATATAATTCACATTAACCAGTCTTTGATTGCTGGGAGCAAGGCTGTTTGCGGGTCACCGAAATTGCTCAATGGCACTCTGTTGGAGCAACTGTCTCCAACAAACTTCTCACATTGCTTTTCTGATGAGGAATCATTCAGTCTTAATGGAAAAATAGTTGTTGCATTACTCTTTGGCGTGATTGTGATTGGCGCGATTGTCTTTCTGCCAATATGGTGGTCAAATCGACGTATTGGACAAATCGAGTTCAATGTACACGATGTTCTTGGTCATTCTGGATGTGTTTACAAAGGTAGACTTAAAGATGGAAGAGACGCTGCTATTAAGAAGTATTCTAAGGTGAACTGCAGATGCAAGGAGCTCGAGATACTGTTGCGCATGTCTGAGAAAGGCTCACCGCACCCTAATGTGGTTCAGTATTTTTGTGTTGAATACAACTGGAACTTTACATACCTAGCTCTTGAACTGTGCCATGGTAATCTCAAGACAGCACTTAAAGATTACAGTGAAGAGTTCGCCGGTTACCTTGAACCGAGAACTTGCTTTTCACAGATAGCCTCCGGGGTGAACCATCTGCATGCAATTGGAATACAACATCGAGATATTAAACCTCAGAACATTCTCTGGAAAAAGACGGACAGCGACCTGAGGTTTGTTATTTCTGATTTTGATTTGGGCCACATTACTGAGGATGAGTCGTTGCATAAGCATAGGTGTGGCTCGTTGGGATGGTGTGCTCCTGAACTTTGGAATCTTCAAGACAGGACTGATGCAGTGGATATCTTTTCACTTGGTTGTGTCTTTTACTTTGTTTTAGCAAGAGGTGACGGGCATCCCTTTGGTTCAGTTTCAAAGATGGAGGAATGTCAAAGTGCTATCATGTCGGAGGGCTATAATTTTTCTCTGTCTAAACTGCAGGACATTTATCAGGGACCTTTGCATATGACTGCTCTAGCGGAAGATCTGCTCCGGGAAATGATTTGTTTCAATCCCAACGAACGAATCAAAGCAAGTGAAATCTTAAAGCACCCGTTGATGTGGAACAGTGAGCAAATAAATACATTTTTCCATGAAATTGGGGATCGTATAAAGGATGTCAAAGATCCAGATACCGTCACTTTTAAAGAAATGTTGGAGAGTGGGGCTGGTACTGTTTTTGTTGGATCCTGGTTGGATAAGGTAAAACAACCTGCAAGGAGTGATTTGAAAGGCTTCAAAGAACGGAAAGAAGAGCTTTGTGGTCTTTTAAGAGTGGTTCGTAATAAAGCAGAACACTTTGAAAATTTGGGAGAGCAACTTCAAAAATTTTACGGTGGAAGTCGCGAGGGTGTTGCAGAGTATTATGTGGATCTCTTCCCAAAGCTTCTATCTTTTACATACCGTACCCTACAAAGGAGTGGATTAGTGTACGAAAATGGACTTATTAAGAAAAAGTCGTCGCTTATGTAAACGAGCATATCCTCGGAAGGTCAAAGGTAAGTGAACAAACCCGCTAAACTGCTTACCACCTCAACAGTAGACTGGTCAAGAACAACTTTTCAAAAGAAACTTTCACTTTCGACGGAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z2E3	Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Mus musculus OX=10090 GN=Ern2 PE=2 SV=2
Q9EQY0	Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Mus musculus OX=10090 GN=Ern1 PE=1 SV=1
Q09499	Serine/threonine-protein kinase/endoribonuclease ire-1 OS=Caenorhabditis elegans OX=6239 GN=ire-1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012472 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF06479 all species →	Ribonuc_2-5A	Ribonuclease 2-5A	Family	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR010513 all species →	Domain	KEN domain	Interproscan
IPR038357 all species →	Homologous_superfamily	KEN domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR045133 all species →	Family	Serine/threonine-protein kinase/endoribonuclease IRE1/2-like	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13954 all species →	IRE1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0036498 all species →	Biological Process	IRE1-mediated unfolded protein response	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0070059 all species →	Biological Process	intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress	Interproscan
GO:1990604 all species →	Cellular Component	IRE1-TRAF2-ASK1 complex	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_007901-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.