Gene detail

Detailed information of FUN_008023-T2 in Acropora pulchra

Genomic Location: ptg000002l:7314025...7332268
NR annotation: XP_029202450.2, LOW QUALITY PROTEIN: stress-induced-phosphoprotein 1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_008023-T2

TACCGCTTTCTTAGCTTGTGCAAGACCCAAGTAATAACTTGCTTCACAAATGACCGGATCTTTCTAGACGGGAGCCCTCGTTTCCTTGCGCAGAGGATTATCACTAATTTTCAAATACGCATGATCAGCAGCACGTGCTTATGAAAAAACTATACCAAGATGGCGGATGCCGTCAAGGCAGCTGAACTGAAAAACAAGGGTAACTCGTTCCTTCAGACCGGAGATTTCGCGAAGGCCATCGAATGCTACACGGAGGCAATCGCCTTGAATCCGTTGGAACATGTCTTCTACAGCAATCGGTCGGCCGCTTATGCCAAGGATAAAAATTACGAAAAAGCACTAGCTGATGCCAGGAAATGCGTGGAGTTGAAGCCGGACTGGGGAAAGGGGTATTCAAGACTTGGAGCTGCGCTGTCATTTCTTGGACGCCATGCTGAAGCAGAAAGAGCTTACACCAAAGGTCTGCAGCTAGATCCCACCAATGAACAGCTGAAAAGTGGATTGGAAGAAGCAAAAGTTCAAGCAGCGCGTAATAGCCCAATAACAAACCCATTTGCTGTGCCTGACCTTTACGTCCGCCTTGCTACAAACCCAAAGACTAAACAATTCTTAGAGCATCAGGACTACAGAGAAACCATTGAAGCCCTCAGGAAGAATCCACAACTGCTTGGCACTCAACTTCAGGATCCAAGAATCATGCAAACAGTTGCAGTGTTGCTTGGTTTTGATGCTGATGTTCAAGACACTGAAGAAACCCCTTCACCGCCACGTCAAGAGGAGAAGCCAAAAGACGAACCAATGGAGACAGAACCAGAACCTGAACCCGAGGTGGATTTATCTATGAAACAGTCTCTGGAAGAGAAAGAGAAAGGAAATGTGGCATATAAAAAGAAGGATTTTGAGATAGCTCTACAACACTATGCAAAAGCTGTTGAACTTGACCCCACCAATGCCAACTTCCTCACTAACAGAGCAGCTGTGTATTTTGAACAAGGCAAATATGATGAGTGCAGAGAAGAATGTGAGAAAGCAATCAATGTGGCCAGGGAACATGGTGGAGGCTTCAAATTGGTTGCTAAGGCCTATAGCAGAATTGGCAATGCCTACAATAAGCAAGGAAAGCTTCCAGAAGCCATTGATGCCTACAATAGATCTCTAGTGGAACACAGGACACCAGATACACTAAAAAAAGTGCAGGAGGCAGAGAAGGCCCTCAAAGAGCAAGAAAGATTAGCATACATAAATCCAGAAAAGGCAGAGGAAGAAAGGGAAAAAGGCAACGTTCTTTTTAAGAAAGGTGATTTCCCAGAGGCACTCAAGTGTTACAAGGAGGCCATTAAGCGGGATCCAAACAATGCCAAACTTTACAGCAATCGTGCGGCCTGCTATCAAAAGCTCGCAGCATTTCAGTTAGCTCTGGCGGACTGTGATACCTGCATCGAATTGGATCCTTCGTTTGGTAGGTTATCACTTGACTACCTTGCAAGCTAGTTTTGCAGGAAATCTATTTTTATAATCTTAAAGAAAATTGCGTCGTTTTGTAAAATGGTTACGAGCTTGAACTTGGCAGGCGGCAACTAGCGGACATTTTGCCAACGGTCGAAGACTTCGTGACTACGGGAGAAAAATGAATCCAGCGGTCAGAAGAAAGAAGAGGCACAACTGTGTGCGCAAAAAGAAAAAAAATGCAACGCTGAATACTGCACCCATGCTTTCTGCCATCTTTGTACTCCACTCCTGTTGTAACCTAATGAGAACCAACTCTCGCCCAAGGCCAGGCTCCTTTGTGAGGGAAAAGGTCAAGAAGAATGGGGAATGGGGCACAGCAAACTCGCCGAGAAGGCGAGAAAAGCGGAAATTGGGAAATAGTTATGAATAGTAACGCAGCTTTTTTTTAATTTCATTGAGCTCGGTCGGAAATTACAAGTTAAATAATTAATCATTTCTTAACTTCATTAAATAATTGTGTACTCTCAAGGAATGGAAAGGTATAGTTGCCTGATGATATGCTCTTTATAATTTAAAAGAAAAAAAATGTATATTAAGTAAATAAACCCCTTTCCGGCTTGCTGGTATATCGGAAGATAATACTCACGACTGAAAGATTGTCCTCAAAATTTCACTGTTGCCCTCGAAGCGTTGCTTCTCGGCCAACTGTTCATTTTTCGGACAATCTTTCAGCCTTGGGCGTAGTCCTCCGATATACCAGCAAGCCGGAAAGGGGTTCGTTTATTTTGTAACCGCCTGAATAATTTCTCAAGGCGAATGCACGTAGATCGTTCCTGTATATTTTGTGGAGTTTTTCGTGTTTCTCTGTGCAGAATTGTCAACCAGCTTTTTAGTTTCTCCGTCACTGGCCTCTGCAAAAAAAGTTCTTTTGTTTTCCATAACCGATGAAAAGTTTATCTTGAACGCTTGCTCAGTTCTTGGCCTGTATTCCGTCGAAATAAAATCACACGACGGATATCAAATCGGACGGCGGATATCTTCTGATAACTATCGTCCGATTTTTTTATCGCGTGATCAGTTTTATCCAATGAGAAGATTATTCCAATGAGAGCCCGAAGAAATTAAAAATTATTCCAATGAGAGCCCGAAGAAATTATTCGTTGGGTTATAAATATATATATATATTTCCTAGCAATGCACATCGGCTTCAACATGTACATAATTCCTTCATACATATTGCGAGGTCCAACACATATATCATCGCAAAGACTTATTAAGGTGGCAATAACGTGCTTGTATTGAGAATTTCATTACTGAGCAAAATAATGTTGACGAACTTAACATTTCTTTATTTGGAAGAATTTGGATGTAATTGGAGTTAGTTTATTTTTGAACTCTACTGATTGATTTTGCAGTCAAAGGCTACACAAGAAAAGGTGGTGTCCTATATGCACTGAAGAAGTTCACCGATGCACAAAAAACATACCAGAAAGCTCTTGAGATTGACCCTAACAACAAGGTATAATACTGAGATTCAATGTACACTTGCTTAGCGTTTTTTCGTTTTAGTATTTTTGTTTGCGCAGAATTTCCCAACAAGAGCTACCGCGTATGATTTCCCGCGCCTTGTGTCAGCCGCGTGTTTCCTATCGGTGCGCTACTTTCCCGTGCTCTGTACCAGTTTCACGCGTTTCCATCCTTCATGGAGCAGTTTTCACGTGACTGTCGAAAGTAATTACGTATGTGATCGCTTATTGATTGGCGTAGAAATCCCGCGCCAGTTTTTCAACCAATGAGAAGCAAAACCAAAACCAATTGCACCTTGTGCGCCGCGCGATTGGTTTTTCTCGGTCACAGTCATTTGAAAACCGCTCAGTCATTACCATGTTTTATCACCGCAATCGAAAAATTTCTTACTTTTGCAGTAATGTCATGTATGTCTTTTGTTTTGTAATTTGGGGGGATCTCAGTGCTTTTCTTATGTGTCATATCTCTTGGTTGCGGTATTTTTATCTCTTCTGTTTCAGCTGTACGTGTTCTTCTTTTTCTTTAAAAATAGTTGTGTAATTTTCCCGAGCTTTGCATTCAATGTTGCAGTTGTTTCCGCGCCACCGCCTTTTTTAATTGTAATCGTGATTGGTCATCGGATCTTTTACCTCTGTTTGAATTTTGTGCACAGGAAGCCCAGGAAGGACTGCGAGCTTGTTACAAATCATTTTCCGAACAACCAACTGACCCAGAAGAGATCAGGAGACGAGCCAATGCCGATCCTGAAATACAGGTGCGATGAAGTGGTTTCCTAGGCAAATCTCCCAACGTTAGGATCCGAATGTAGTGCTGTCCCAGTGCCACATGAAGAAATTGTGACCGACCCCTTACCCGTGGGGGAAGAAATAGTGACCGACCTGAGGGAGACGTTTAAAAGTTTGAAAGTCGTAATGCGAATGACCAACGGCTAAGAAAGTTACAAAAAAAAGAAAGCAACATCAAGCAAACAAAAAATAAACACCCTCTTGTCCACCACCTATGACTGTAAGGGTTCCTGTGGACTTCATCTCCTTTTTTCTGTACTTGCTTGTCCCATATCCTGATCTTCCTTCATGTTTTTGTTGTGTTAGGAAATTCTGACTGATCCAGCCATGAAAATCATCCTCGAGCAGATGCAGGAGGATCCAAAAGCTGCTCAGGAGTAAGTCTTTGTCTCTCTTTAAAGTGCATTTTGCATCTCTGCTGCAAACTCTCTTTGCTCTTTCAGCGTTCGTGGAAAAGTTGATTTTAATGCCTTCGGATTAATGCATGTAATTATATGCATGCTGACTTCATTAAGTGTCATGAGGTGTCCCCTTACCCTTCTCATCACTTCTGGCGAGAAATAGGGACATATAAAGGTCACGAAGTGTCCTCCTATCTGTAATCCTCATAGAGGCAAACACAGTAACTTCAAACCAAGGCTAGAAAATGAAAATAACACAAATGCTACCCTCAATTTTCAAAAAGGTAGTTTACGCTGAAACTGAAGAGGGCACTTGCATCGTGCTTGTATCAAATGACGGGCATTTCTCGACACATTGGTAGGATTTGGCAATGGTAACACCGTCAACACTCGCTGCTTTTGAAAACGATTGGCGGAATCCTTGCAATGACAAATATTTCCTTTTGTCTTGATATTCTTTCGTTGCAGGCATCTTAAAAATCCCGAAATCCGGAGCAGAATTCAAAAGCTGTACGAGGCTGGAATCCTGCAGATCCGCTGAGAAATTCAGCAAAATTCCAGGGAATTTGTAGGGAAACCTCAACGATTTGCTCATTGTTATACAATCTGCGCCAAGGTGCTTTGCTTTTTTCCTGTTCGAAGACTTCATGTCCTTTCGCTGAAAATTTCCGATCATGTCGGTGTTTAGGTGGTGTCGATTTACCCAGCAAAGTGGACTTAATCCAAGAAAATCGACTCTTGAGATTTACAGTACGTTTTTCATTTTTCAACCGACAGTCGAGTCACCAAAACATACTGAAGCATTTATTCGTATCATTAATTACAAATCTTGCTTAATGAGGATTATTGTAATGTCTCTCTTGGAATAAAAAGACGTAGTTGTTGACGTCGTTCGTTACAGTGGTAATGAGTTATTTCTCAAACGTTTTTAACAGCTTGTCAGCCGATTTAACCGCAGCTTTAGTGCGGAATGTAGTTTGCTGCTGGAGCATAGTCGTTGGGTTAGCTTTCCATCTTTCCGAAGGCAAAGTATAGGGAAAACTTGACCCCCTTTTCTTCCTTGATGAAGGAGATGGAGGAAAAGGCCCATCCCAGTCGCTTTTGGTTTCAATTGATTACTTTCGAACACGCGCACGCGCACAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R8N7	Stress-induced-phosphoprotein 1 OS=Macaca fascicularis OX=9541 GN=STIP1 PE=2 SV=1
P31948	Stress-induced-phosphoprotein 1 OS=Homo sapiens OX=9606 GN=STIP1 PE=1 SV=1
Q3ZBZ8	Stress-induced-phosphoprotein 1 OS=Bos taurus OX=9913 GN=STIP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003550 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF17830 all species →	STI1-HOP_DP	STI1/HOP, DP domain	Domain	Interproscan
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR041243 all species →	Domain	STI1/HOP, DP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22904 all species →	TPR REPEAT CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051879 all species →	Molecular Function	Hsp90 protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09553	STIP1; stress-induced-phosphoprotein 1	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.