Detailed information of FUN_008090-T1 in Acropora pulchra

Genomic Location: ptg000002l:7896481...7920215
NR annotation: XP_015758255.1, PREDICTED: striatin-like [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P58405Striatin-3 OS=Rattus norvegicus OX=10116 GN=Strn3 PE=1 SV=2
A5D7H2Striatin-3 OS=Bos taurus OX=9913 GN=STRN3 PE=2 SV=1
Q9ERG2Striatin-3 OS=Mus musculus OX=10090 GN=Strn3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005423 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08232
all species →		StriatinStriatin familyFamilyInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR051488
all species →		FamilyWD repeat-containing striatinInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR013258
all species →		DomainStriatin, N-terminalInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15653
all species →		STRIATINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17608STRN1_3_4; striatin 1/3/4-Protein phosphatases and associated proteinsko01009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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