Detailed information of FUN_008129-T1 in Siderastrea siderea

Genomic Location: contig_6:6188295...6190174
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01121
all species →		CoaEDephospho-CoA kinaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001977
all species →		FamilyDephospho-CoA kinaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10695
all species →		DEPHOSPHO-COA KINASE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004140
all species →		Molecular Functiondephospho-CoA kinase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0015937
all species →		Biological Processcoenzyme A biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00859coaE; dephospho-CoA kinaseEC:2.7.1.24
Pantothenate and CoA biosynthesisko00770deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_008129-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
12TPM > 0
7Conditions
26.7Max TPM
0.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 0.23 1.77
holobiont · low.pH Control.temp 20 1 0.39 7.84
holobiont · control.pH_high.temp 20 2 0.32 3.35
holobiont · control.pH Control.temp 19 1 1.40 26.67
Whole organism 4 3 0.57 1.45
unannotated 1 1 0.07 0.07
live coral tissue/skeleton 1 1 0.18 0.18

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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