Gene detail

Detailed information of FUN_008183-T1 in Acropora pulchra

Genomic Location: ptg000002l:9047132...9055169
NR annotation: XP_015763554.1, PREDICTED: apocarotenoid-15,15'-oxygenase-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_008183-T1

TTGGGATAGCAATATTATCACGACACTCGACAAAACATGGCGACCAAAGATTTTTCCGTTGATGCAGTTCGTGGAGATATTCATAGGCCTTTGGACCTCGAAAAATGTGGCCGAGGTTGGGAAACGCAGAGGGAACACTGTTATTGGATTCCCAAGGCGGATATTATCGGTGAAGTGCCAAAAGATCTCCGTGGAACTTTATTTCGTAATGGTCCAGGAGTGAACGAAGTATATGGGACTGTCTTGAAGCATCCAATTGATGGCGATGGAATGGTGTGTGCTGTAACATTCCAAGATGGCTGTGTTCACTTTCGATCCAAGTTTGTGAACAGTGAACATCGTAAAGAGGAATCAGAGAAAAAGAAATTCATTTATCGTGGACAAATGGGAACCAAGCCTGCAACATCTCCGTTTAAATACTTGATATCTGCTCTGATGAGACCACGCGTTACCTTTCGTAATCCATCAAATACCAACTCATTCTATTGGGGAGGAAAGGTCCTTACAAGTTTTGAAACCAATTTGCCATATTGCTTGGATCCACACTCACTGGAGACACTTGGTCCAGAGAATTTGAATGGAAATCTGCACTTTGGATGCTTTGCAGCTCATTTTAGAATTGACTCCGAAAGACAGCGACTGGTCTGCCTGAGTTTGCGTCCAGGTTTTTCTCAAATCAAGCCAAGTCTTGCAGTGTATGAGTTCAGCTGCTCCTGGCAACTCTGCCAGAAACAGATTCACCATATTGATGGATTGAATTATGGACACGACTTTGTACTTTTGCCTGACTATTATGTCTTTCACATGACACCATTTGTCAAGGGGTCTTGGTGGGCAACCACCAAGATGCTCCTGGGGTGGAGTTCCCCAGGAGAACAGATGCAATACCACCCTGAGCTTCCCTCACGCTTTGTGATCATACCTCGACACAAGAATAACGGTGACACAGGCGTGATGTTTGTGGATACAGATCCCTGTCATATTTTCCATTTTGGTACAGCTCAGCAAACTGGAAAGATGATAGAATTCTGTGCGGTGTGCCTTGACACAAGGCTGGATATGAGCTTTGACAAAAAGATCTGGCTGTCAAATGCCTCTGTGTCGCCAGGTTTGGCTTATAAATTCACAATCGATCTGGCAACCAATCGTTGTACGCGGTCTCAAGTTGATCGCGCAAGTGTAGAATTCCCCACTACCCACCCCTACAGGAATGGAATAACAGGAACTCGGTTTAACTACCTCATGGCTTGTGACCGACCAGGATGTAATCTGCCATTCAGAGATGTTGTCAAGTTGAACGTCGAGAATGGGCAGCGCGAAGTCTGGTATTCTCATGGCTGTCTTGGCGAACCTGTCTTCGTGCCCCGACGGGGTTACAACTCGTGGCGAGAAGGCGACGAAGACGATGGTTACGTTATTGTGCAAGTCTACATCCCCGAGAAACACGTGACCGAGTTTTGCATTCTAAATGCTAAGGATATTGGAAAGGGGCCTTTGGCGAGGATCCAATTGAAACACCATGTACCTTATGGCTTCCACGGGACTTTTACTCCAGAGGTCTTCATCAATGGCCCAAGAATGATTTCAAAGTTATGAATTAGTTGATACATTAGATTCTGGGAAGTCAACAAGAAACTTGACCAAAACTTTTGGCGCGTAAACCGAATACAGGCAAGTTTGTGGCGCTGGGATAATCTACTTTGTAAGACAATCCACGGAGTCTTTCTCAGCGAAGATAGTAATTTTTAAGATAATAATTTAACATTATACACTGTAGACCCGAAGTATACAGTTCCCTCTGCAGACGAAAATTTTTTATTTAATTCCCATGATTAATTTTCACTGTAAACCAACAATTTTTTTATGAAGTTGTGGTAGCCGTTGTTGTTAGTTGTAAAAAACAACTTAACCAGCACATCATCACGCGAAAAAATTCTGCTTTTCACTTCGATTGGATTCGGTTTTATGCGCAAATAGGAAGCTGAAGCAGCAAAGACGGCAACGTCAGCGAAAACGTCACTTGAAAATAAACATTTGGGAAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
K4CJJ1	9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Solanum lycopersicum OX=4081 GN=NCED2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007787 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03055 all species →	RPE65	Retinal pigment epithelial membrane protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004294 all species →	Family	Carotenoid oxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10543 all species →	BETA-CAROTENE DIOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0010436 all species →	Molecular Function	carotenoid dioxygenase activity	Interproscan
GO:0016121 all species →	Biological Process	carotene catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_008183-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.