Detailed information of FUN_008296-T1 in Acropora pulchra

Genomic Location: ptg000002l:10053688...10061314
NR annotation: XP_015776873.1, PREDICTED: E3 ubiquitin-protein ligase synoviolin-like isoform X1 [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9DBY1E3 ubiquitin-protein ligase synoviolin OS=Mus musculus OX=10090 GN=Syvn1 PE=1 SV=3
Q6NRL6E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis OX=8355 GN=syvn1-a PE=2 SV=1
Q5XHH7E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis OX=8355 GN=syvn1-b PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005946 (this species only)
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13639
all species →		zf-RING_2Ring finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050731
all species →		FamilyHRD1 family E3 ubiquitin-protein ligasesInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22763
all species →		RING ZINC FINGER PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_008296-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10601SYVN1, HRD1; E3 ubiquitin-protein ligase synoviolinEC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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