Gene detail

Detailed information of FUN_008381-T1 in Acropora pulchra

Genomic Location: ptg000002l:10991020...11003472
NR annotation: XP_029189656.2, aprataxin and PNK-like factor isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_008381-T1

ATGGCTATTTCTTTTCTGTTGAGGCCTCAGCATGGTGGCAAAGATATCGCAATTCCTTGTGGCAAGACCACCATAGGCCGTGGACCTTTTCTTGGGGTGACCGATAAAAGAGTGTCAAGATCTCATGCAGAAGTGCAGCTCTCAGGTGGAAAACTCACCATTTTGCCACTTCATGTGAACCCAACATTTCACAAGACTGGTGTCAACAAGAAGTTTGTTGCTTTGAAGAAAAATGAATCTCATGTATTGCATAAGGGCGATGCAATTTCACTGCTTCCTGATGACATTTGCTTCACTGTCATTCTTGAAGAATGTGCATCTGATAGTAACATGACAAAGAAGACAAACAATGCTGAAAACAAGCTCGGTAACAATTTCCCCTCCTCTGTGGTTAATGTTGTGGAAAATTGCTATGAAAATTTGTCAAAAACAAAAAAACAGCTCTCAGAATCTTTTCTAGACGAGTTTTTGGATAACAGAACATCAATAAAAAGTGTGCAAGCTGCCTCTATTCAAGCTGACAAGGAAACAGGGAATCCTTCACCTCAATTCCCAGAAACTCTTTCACTGTCGTCTTTGAGTAACAAAGATGTAGTGTTGCCTACAAAAATAGAAGTGAAGCCTGCACCACTATTGCAAAAGACTCGCAAACTCCCTGCATGGCTGATTCAAGCTTCAAATGTAGATATAAAATCAACAGAAAATAATGCAAGAGCTAGGAAAGGCAAAGCTGGTGCTGCAAATGCTGGCAAAAAAGTAAAACCATCCACTCCTGCAAGCAAACATGGAAAAAGTTCATCACAGTCTAAAACAAAGCAGAAAAAGTTTGATTCAGATGAAGAATTTATTGTTAACGAAGGCGATGAAGCTGAAAATGAAGACTGGACGGGAAAAGGAAAGGCTGTAAAACTCACAGGAAAAAAAAGATCTTCCGCAGAAATGCTGGATAGCGACGATCAGGTCATAGCCATAAAACACCAAAAGACAAAAAAGCTATCGAGCGAAAATTGTAGTGATGATGGTAATGAGTTACCTTCGCTACCAACTGGTTCTGGTTTGAGTGAAGAAGACGAGTTACCTGCAGCTATAAAGGACAAAGTAGGAAGCTCAATGTTAGGGAATGACCAGCGTACAGCTTCCAAGCTTCCCCAGTGTCCATATGGCAGCAAATGTTACAGAAAAAATCCAACTCATTTTGAAGAGTATTCACATAACGAAGAAGATGATAAAACTGATAATAAGGACTCTGGTGACAGAAGTGATGGCGCAGCTGATGACAGGCCCGATTGTCCGTATGGAACCAGCTGCTACAGAAAAAATCCTCAACACAAACGCGACTATAGGCATACAAAGTCTCTTGGTCGTCCAAAACGACCGAGAACAAAGCACAAGAGCGTACTCGATAACGAAAGCGACGAAGATGGGCCGAACACTTACGATTATAATGATAGCTTTTTAAATGACGAAGAACTGAGTGAAAGCAGTTACTCAGCAGGATCGACCGACGATTCTGATTGGCAGCCTCAAGGAGAAGATAGAGATGACGACGAGGAGAATGTAGACGACTTGTTATCAGAGGCACGTGGCTTCTTGCGCAAACGAAGAAGCACTGTAGTTAATCCTGCTGTGTCATCTCGGCCAAGATCCTGCTTCAGACAGTACTTCCTTGGACAATACATTCCACGGTACTTGGAAATTAATTTCAATAATACCCGATCGAGCTACCTTAAGTACATCTGCCAAACACGCGACAACATTTTTACGGTGCATTACTATGCGTCGTTATTCGACGAACGATATGGTGTCCCTGTATACTCTGGTTACAGGATAAGTCGAAGTCAAGGACTACGTATCGACACTATTTCATACAGGCAAAGACCAAGTTCTCGCGCTTGGCAAAAGACTCCCGGCATAACTCTTCAGGGTGACAGTACTGTGTATGCTGGTTCAAATTCTGCTAACATTCACAGAGGCCACTTAAACCCATGTCAAATCAACTCCTACAACAGAAGCTATATGTTTGCCACTTTTGTTTACACCAACGCTGTACCACAGTGTGGTTCGAGCTTCAATAGCGGAAGTTGGATGAGATTCGAAAAGAAAATAAAGAACTATACCAGGGACGTATGCGCAGGTACCCGCGGTGGAACTATGTACCTTGTTACGGGACAGTCAAGGTATCGCATTTCTGTTTCGCGGTCTGGTGCAATATCTCAAGTGGCAGGCGGAGCGCATTATTTTCCCACCAGAGGTTCTGTACAAATCCTACAGCCAAACTCTATGTGGACGGCCGGGTGTTGCGTCTACACCTCATCACGAACCCACACTACGACAGCAAAGTCCTTTGCAGTCATGGGAAACAACGACATGCGTAGCCATTGCACGTTGACCAGAGCTTTGCATTTGACCACTTTGGAAACAATGATCGTTGCTCCGGGTGCGACGCCAGCTGATATTTTTCCAGGATTTGCTACTTGCAGAACAAACAGTGATTCCCACAACTTGTGA

Transcript

FUN_008381-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IW19	Aprataxin and PNK-like factor OS=Homo sapiens OX=9606 GN=APLF PE=1 SV=1
Q9D842	Aprataxin and PNK-like factor OS=Mus musculus OX=10090 GN=Aplf PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006240 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10283 all species →	zf-CCHH	PBZ domain	Domain	Interproscan
PF01223 all species →	Endonuclease_NS	DNA/RNA non-specific endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044925 all species →	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR001604 all species →	Domain	DNA/RNA non-specific endonuclease	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR044929 all species →	Homologous_superfamily	DNA/RNA non-specific endonuclease superfamily	Interproscan
IPR019406 all species →	Domain	Aprataxin and PNK-like factor, PBZ domain	Interproscan
IPR020821 all species →	Domain	Extracellular Endonuclease, subunit A	Interproscan
IPR039253 all species →	Family	Aprataxin and PNK-like factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21315 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003906 all species →	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_008381-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.