Detailed information of FUN_008416-T1 in Dendrogyra cylindrus

Genomic Location: contig_10:5166850...5181213
NR annotation: XP_020619444.1, cell differentiation protein RCD1 homolog [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6IP65CCR4-NOT transcription complex subunit 9 OS=Xenopus laevis OX=8355 GN=cnot9 PE=2 SV=1
Q6P819CCR4-NOT transcription complex subunit 9 OS=Xenopus tropicalis OX=8364 GN=cnot9 PE=2 SV=1
Q92600CCR4-NOT transcription complex subunit 9 OS=Homo sapiens OX=9606 GN=CNOT9 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007594 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04078
all species →		Rcd1Cell differentiation family, Rcd1-like RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007216
all species →		FamilyCCR4-NOT transcription complex subunit 9Interproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12262
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0006402
all species →		Biological ProcessmRNA catabolic processInterproscan
GO:0017148
all species →		Biological Processnegative regulation of translationInterproscan
GO:0030014
all species →		Cellular ComponentCCR4-NOT complexInterproscan
GO:0030015
all species →		Cellular ComponentCCR4-NOT core complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12606RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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