Gene detail

Detailed information of FUN_008536-T1 in Dendrogyra cylindrus

Genomic Location: contig_10:7581087...7598599
NR annotation: XP_020620841.1, tauropine dehydrogenase-like [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_008536-T1

TTTGTTCAACTCAAGCATCATGGCGGATGAAAGTGATGATGATACATGCGATCAAATAGGACAGAACTCTGGACAAGGAAATCAAGCAGTGGAAAGGCCTGGAGATGGATCTACAACTCATCAAGATAATGCTGGACACAATTCTACAGTGAACAGTAGGGATTCGTCCAGCAATATGGACAACCTGCCAGCAAACACCAATCCAACGACTGAAGGAAGTAACACCTTGCGCTATGTAGCTGTAGGAGTGGCAGCTGGTGCCGCGGCAGTGGCAGCTGCCCCTGTGGTTCTTAGTGCTGCTGGCTTTACTGCTGGAGGTGTTGCAGCTGGTTCAATTGCAGCGAGCGCACAGTCAGCATTTTATGGAGGCTCTGTGGCTTCTGGAAGTGCATTTGCATTGCTACAAAGTGCAGGAGCTGCCGGTATTGGGGCAACAGCGAATGCTGCCATTGGTGGGATTACTGGAGGGATTGCAGGCTTAGGAGCAATGGTGTTTGACAGACGTACAGACATCAAGCTGTTGATTTGTGGTTCTGGTAGTCACGCACACGCCTTTGTTAGTATTGCATCAGCTGTGAAAGGTACAGACGTTCGAGTGCTTACTTCTGAGAATGAAGCAAGACGTTGGAATTCTGCAATCGACCTAGAGGTTACTTTTCATCGAAGGGGAAAGGAGCCAACTTCTTTTACATCCAAACCTAAGCTAGTAACGGATGACCCAAAAGATGCCATGCAAGATGTTGACATTGTGGTCTTTGTGCTGCCAGCATTTGCCCAAGATGTTTTTCTAGATGCCATAAAACCTTACGTAAAACCTGGCACAATAATCGTTGGTCTACCAGGGGGCCCAGGTTTTGAATTCCAGGTCCATGCGGTGCTGGGTGATGTAGCCCGGAAGTGCACCATCATGAATTTTGAGGCATCGCCTTGGATGTGCCGTACCACTGAGTTTGCTGCAAAGTGCGAGGTTCTTGGTACCAAGGAGACCCTATTAGGAGCAATAAAGAAAGGAGAGGGTGTTGCGCCCAAGAAGGACCCAGTGTCCACGCTTCAATATCTCCTGGGACCCCTCCCTAAACTGAATGTCTCTGGTCACCCGTTGGGTGTTCAGTTAATGAGCACTAACGCCTACTTGCACCCGTCAATACTATATGGTCAGTGGGAGGGGTGGAACGGGAAACCACTTGACGAACCACCCCTGTTCTACAATGGCTTGAAGGAGTCAGCTGCGAACCTTCTCTCCAGTGTATCAGATGAGGTTGTTAACACTGGCAACGCCCTTGAATTGAAGACTGGAGCTGACATGTCTAATGTTGTCCACATTCATCAGTGGCTTGTGCGACGTTATCCTCATGATATTAGAGACAAGTCGACCCTTCGCAAGGCAATACAGACCAATGCTGCTTACCAAGGGCTCAAGCATCCGGTCAAGACAACGAAACACGGAAAATTCATGCCAGATTTCACGTGCTGTTTCATAACGGAGGATGTTCCCTATGGCTTGGTAGCCATCCGGGGTATTGCAGAAATTGTGGCTGTTGAGACGCCCAATATTGACAAGGTGCTTACATGGTGTCAGGAGAAAATGGGTGTAGAGTATCTCGTGAACTCAAAGTTACAAGGCAAAGATGTCTCGTCGTCCAGAGCACCGCAGAGATACGGATTCAATACTCTTCAATCTATGCTGTGAAAGACTTATTATTTAGCTTGCTCTCTGCACCCAAGATACACCCTAAAATATATGTCGTTAATTATTAATGCATAGTTAAGATACTGGGTGATGAAGCGCAAACAGGGTGGTTGGCGTATTTTGGAAAGCGGAATTGTGACCCACCTCTTACACTAGGGTTGGGCTAAACTGACTGTTCCCCACGCCCCCCATTCATTCCTTTTTTGAATTATAATCACTTGGAGAATTGAGTGCGCATCCGAAGACACTCGGAGGCCAGGAAAAACctaattaaaaaaacaattaaaaaacggGAAAAAATGTAGGAAACCTGGGTGGGAACCAAAGCTCCAAACTCCGACCCTTCCTACGGGACCAAAAACCAAAAAGACTTGCTAAATTACTATATagaaaattaagaaaattatGCAATCAATAAACTAAAAAGCTCGCATAAATTTGACGACGAAACTGACTAAATTAACCAAAACAAACCGATGGAACAAACCTAAGTAAAATGTCTGACTGTACGTGCAACGACCGAGAACTGACTCGCATACTAAAGAGCCAACTATTTATACCAAATACATTACACGCGAAGTTAATGCACATGCAAACGCATGCCTACATTTCTCATGACTTTACATCAGCAAACACTTCATATCTCATAACATAACAGCTCTTAACAATACCGAAAAGAAATCAATTCTCTTCTAATGTAATGCAACCGAAGAGAATTTTCGAGCCCCggtcggggcactgcgttgtgttcttgggcaagacactttactctcatagtgcctctctccacccaggtgtataaatgggtaccggcgaatttaatgtagggggtaaccctgcgatggggagcagggatggcccagtggtgagagcgctcgcttcccaccaatgtggcccgggtcgattcccggacccggcgtcatatgtgggttgagtttgttgttggttctcgtccctgctccgagggtttttctccgggttctccggttttcctcccttcacaaaaaccaacactgctaaattccaattcgatcgggaattcgagggccacaggtttgtcagtcgcgagactgttatgtgcttccctcgttaaacatagttgattgattgattgatttatttatttatatatttcatcccatccaggggagagtaaaAATACTTCTAtatactgaaaccgggataagttccggcctgatgggccacaaggCTTGAACCTTACTTAAGCTTTTCCTGTATGGATGTAATTAAGTGCTGATTTAGCTTCTTCCATTGCAAGTTACTAAAATGAACATTGGCATGCAAGGCGTGCAAGAGCTATGCTTTAAATTGATAATCATGATCGTGAGACTGGTTGTGTATTGGCTTTTATGAAATGGGAAGATCAATCGCATATTTCTGTAAGGCATAGTACAGTCAAATAGTAATGGTTAGGTTAACGCAAATTCGTACAATTCAGATTCTGGTTACAATAAATGGCAATAAATATTAAATCCTCGTGCTTCTCTAAGTACTTCTCTCGTGTTCCgagtgcttatataacttaagagcagttctttctaggagtcaagcaaagtgagaaatgaaaatttttgaccccgcttcaaattttgcatgcagttagatattcatggggg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8T882	Tauropine dehydrogenase OS=Arabella iricolor OX=65494 GN=tadh PE=1 SV=1
Q8N0N9	Opine dehydrogenase OS=Haliotis discus hannai OX=42344 GN=tadh PE=2 SV=1
Q8N0P0	Octopine dehydrogenase OS=Mizuhopecten yessoensis OX=6573 GN=odh PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001044 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02317 all species →	Octopine_DH	NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	Family	Interproscan
PF06140 all species →	Ifi-6-16	Interferon-induced 6-16 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038213 all species →	Homologous_superfamily	IFI6/IFI27-like domain superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR003421 all species →	Domain	Opine dehydrogenase	Interproscan
IPR051729 all species →	Family	Opine/Lysopine Dehydrogenase	Interproscan
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR009311 all species →	Family	Interferon alpha-inducible protein IFI6/IFI27-like	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38015 all species →	BLR6086 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23233	ODH1; D-octopine dehydrogenase	EC:1.5.1.11	Arginine and proline metabolism	ko00330	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.