Gene detail

Detailed information of FUN_008620-T2 in Acropora pulchra

Genomic Location: ptg000002l:13712138...13724150
NR annotation: XP_029212749.2, serine/threonine-protein phosphatase 4 regulatory subunit 2-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_008620-T2

GCCATTTTTGTTGTTCGTGATACTAATACTCCTTTGAATATTTTAAACTCTCTTAAGATTTTGTCTCTTTTATCTTCAACTTAAAGCAGTTTCGATGGTCATTCAAACGATGGAGAACAATGAGGAAATCCTTCAAGCTCTGCACGACTTCGGGAACATGTCGAACGCTGAGAAATTCTTAACCCAAGACCTCGAGGATATGCTGTCATACATCGCCAAGACCGGCAGAGTCCTATTTCCCTGGAATTCCTTGAAGCCAGTATTTCTTTTTAAACTTGATAAGGTTATGCGAGAATTTTTTGAGAGCAGTCCATCCAGGAATGCACCCTCGTCATCTGAGCCAACCATCACTGCAGACTTTGAAGTTATGAGGCAGAGATTACTGGATTATCTTGACTCGTTTACAAGTGCCCCTTTTACGATCCAAAGACTCTGTGAATTGATGGTTGAACCCAGAAAAAATTACAGCAATAGTGAAAAGTTTATGAGAGGAGTGGAAAAGAATGTCCTAGTTGTTAGCACCATCGACATTGGCAGGGATGATATTTCTGTTTTTAGTCTCACAAATGATATTGACAGACTCTCAAATGTGCCAAACGGACCTGTCACAAACGGAGTGATGACGTACGCAACTCCCTCAGAAAGCAGTTTTGTCGCTGATCGTAGTTACAATGAGCGACTCTCCCCTCATAACACGCAAGCTGTGACGACAGACACGAATGGATCCACTGCAGCTAATTCCAAGGAAAACGGACACAACTCTGGTGAAAACTGCAACAACAGCAGTTCATCTGCTCTTGCAACGGACGGGTCAAGCGTAAGTCAGCATCAACACGACGGTGAAGAATCTGAAAACCTTGTTAGTAAAGTGGAAGGAGAAGAGGTGGTACAAGAAGAAGCTCCAGGAAAGAGCAATGAAGATGACACAACAAACAGTCCTGAGTCTAATGTTCCGACCGAGCAAAAGGATCCATTAACTGAAGAAGGAGCAGAATCGCTAACATCTCCACCCAGTTAGTCTCGCTGAAACGCCTAAAAACACTCCTCTGTAACAGACCCAGTGGCATCTATATTCTCACCGAGTTTTCGGGGGAAAAGGTTGCCCCTTTCTGTCAAGTTTGCTGTTTTGCCTTTGTCAAACATACACACATGATAATTATAATATGCTAGGTATTTGTCAAAGTCGCACTTGCGAGCCACAAACTGGCCGGGTAAAATTAAGAATTTCACCAGCTACCGGGGAGGCTAAATTTCCACTAGGTGAAGGAAAAATCCACGGGTGGGTTTCATTGGGTGTGTTACAGAGGGGTGTATGAAATTATTAGTGCGATTTAAAAAAATCTTTGATCTCCAACAGGTCATGTCCTGCATCAAGTTAATTGTTCGACAAAAGGCAGATCAGATGATATCCGTGTCCGTTTTTTGACAAAAGGGTAAAAATGACACAGAGTCGGTTTCATTCAAGAAAGGGTGGAAGCTTCGTGGGTCATGGATTGAGATGTTTTGAGGAGTTCTTTCCAGCATGTGATATTTATTGGTCATGAAGTGATGTATGAAATGTTTCATATATTGAACTGCGGATTTGAAATCAAGAAAGCTGTGATCATCGCAGTTACGAACGCAATTTAAGCAATTGCGTATAGAAGCCTGAAAAAGTCAAACCCCGTTGAAGTCCTGACTTTTTCAGGCTTCTCTACGCAATTGCTTAAATTGCGTTCGTAACTGCGATGATTAACCTCTTACTAACCGAGCGCGAGGGCCGTACTGGGGAATATTGGCCCGAGGTTGTGACAGTACGGACCGAGCGCAGCGAGGTCCGTACAAAAACGACCGAGGGCCAATATTCCCCGGTACGGCCCGAGCAAGCTCGGTTAGTAAGTAGTTTATTATATGGCACTCTGTTCGTGATAGTAAAATGCACTTCTGGTGGCTTGCACTTAAAAAATGTTCGTCTTCTTTATCCATCTTTGAAATTTCGGAAAAAAAATTTTTAGCTTCTGCTGGTAGTTTCAATGTGAAGAATGACAATTTTCACACTTTTTTTTCGCTGTCTTGGTTGCAAATGTTGAATTTGCCGGCTTTGCTCCAAAACAAAAATACACGGATTGGACCGTTTCCATGGAAACGGTCCGTACTGCAAAATCCTGACCGAGAAAGAACCAATGAGAGCACAGGGACTGGGTTTGCCATATAATAACATAGCTTACTTGATTTATTGGTCACTTCAATAAAATTATGTTTTGTTTTCTTCTGTAGAACCAGACACTCTCTACAAAGAATCAACGGAAAAAACAGTTGACAACGAAGCAAGTAAACCAAACGAGGAAGAGCCAATGGATGAAAATTAACGGAACAAAATCAGTGAACGAAACACCTGTGTATGGAAAACTGCCACCTCAACAAGTTGCCACCATTTTTAGTCACAGGAGGCTGGCAGCATTTATAAGAGTGACAACACCTAACCTTGTTGTCAGCTTGATGCGTTCCTTCTCTCTTTTACGTGCACGCACACACTGAATTGTCATTTCAACTTGCAATAATTGGAGTGTATTTGGTGACATACATGAAGTCTCACATGTAAAATTGTCAGCCTAAATGCGTATCTACTGTCTGTTTTCGATTATATTTAACTCAATTACACTGTTATACAAATAGCATTTGGAAACATAGGAAAACATGTTGACAATTGTTTTGTTTACTTCTTCCTATCATATGAGTTTATTTCACAGGCGCGCTTACGTACAATCGGAAAGCATTATATACATCGCATCGGCTTGAACCAGATTGCATTAACCAGCAGCTTCAGTGAAAACATGGGTTTGTGAAGGGGTTATTAATCACGCGGGCCCAAAAATTTGGCTTCAGTCGATGTTATGGAGCGCTGTCGGTAAATGATCTCAAGCGGAAAGAGATCACTTTTCAAAATTCAAGCATGTGAAAGATAATATAACAACAGTAAAAATATTGATGAAAATAAAAGCATTGCATTGTAAACAATTACAGTTTGGTAGTTGAGTTAAGTACTAAGAATTTTGGGTTGATGTGTATACATATGCTAGCAATATATTTTGCCATGTATAATTTTTTTGTTTTTTATTTCTCTAATGTTTGACATTTTAACATGTCGTTCATTGCATAGATCCAAACCATTATAATTGATGTGTTCTTGTGCCACAGAGATAGTTGTGTTGTCACTATTGACCTTTCTTTTTTTGATAAATTTGTGGTGCCCTGTCGAAAGATGGAAAACCACGCGATAGTGATCACATTTTGCCCGCTTTACAAGAGCACTAGGAATTCAAGTGAGTTGTACAATATGACTGAGAAAGGCGACCTTCAGATTGGAGTACGAGGGCGGGTACGAGAGTTTACATTCTGAGCACGAGCACTCCAGAAATTGTCGCCTTACGAACCTAAGAAAAGCGCATGCTCAGTACGGAAAACTAGTACTCGTAAAAGGTAATGGAAAACTCTTTAAAGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W2U4	Serine/threonine-protein phosphatase 4 regulatory subunit 2 OS=Drosophila melanogaster OX=7227 GN=PPP4R2r PE=1 SV=2
A1L1M4	Serine/threonine-protein phosphatase 4 regulatory subunit 2-B OS=Danio rerio OX=7955 GN=ppp4r2b PE=1 SV=2
Q6P964	Serine/threonine-protein phosphatase 4 regulatory subunit 2-A OS=Danio rerio OX=7955 GN=ppp4r2a PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006190 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09184 all species →	PPP4R2	PPP4R2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015267 all species →	Family	Protein phosphatase 4 core regulatory subunit R2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16487 all species →	PPP4R2-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan
GO:0030289 all species →	Cellular Component	protein phosphatase 4 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15425	PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.