Gene detail

Detailed information of FUN_008650-T1 in Acropora pulchra

Genomic Location: ptg000002l:14032769...14040264
NR annotation: XP_029212736.1, ankyrin repeat and BTB/POZ domain-containing protein 1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_008650-T1

TACATTTCAGGCAAGACCCAGACGCGAAGAGACGACATTCTGCAGCTCAAATATGTCAAACTCAGCCGCGTTATTCTGCAGCTGCCGAAGAGGAGACATTGACAATGTGAGGAACCTGGTGGAGAACGGTGAAGCGGAGTTGAATCTGAGGGACCGGTGGGACAGTACACCACTCTATTATGCTTGTCTTTGCGGCCATGAAGACTTGGTTAAGTACCTGTTAAACAACGGAGCGCGTTGTGCACCTAACACTTTTGATGGAGAACGCTGTTTATACGCCGCGTTAACGGACAGGATCAAGAATATTCTGAGAAGCTACAAAGCTATCACGCCTGAATGCATGAGAAGGGATTCATACAGGGAATTCTTTAGGAGGTGTCTGGAAGATTGTCCCCACGCTGATGTCTGTTTCGTGATTCAAGGAGAATCAGTGCATGCACATCGCATGATCCTGTCTGCTCGTTCGTCCTACTTTGCTCACAAATTCACGAGAAAGTGGCGTGATCGGTCAGTTATTGAACTTAAACACAGACTGGTAAGACCCTGGGCCTTTAATGCTATTCTTCAATATCTCTACACTGATCGCTTGTACATCGCTATGGATCAAATTGATGACTGCCTTCGCTTGGCGAAGCATTGTAAACTGGAATATCTGGAAAATCAACTACAAATGAGATTGAACAGCATCCAAATGTTCGGAACATCCAAGAAGAGGTCAATCACAGTTGTCAGCATTGAACCCGAGTCCCAGTCCACTAGCTTACAAGATGCGTTCGGACGACTTGCCGAAATCGCTCTCCCGAGTCCTTTTACAGCGCAGCAATTCCCCAAACCGTTTCCTTTTGAGATATCCTTGGACCTTTTCGAAGTTGTTCCTTCCAGTGAGGATCCGCCGCCTTTCTTTGACGTTTGTTTCGTTGTGGACGGCTACAGATTCCATGGTCATAAGTTGTTTTTCTGCGGAAGAAGTGACTATTTTCGAGCTTTGCTAGAATACAAGAACTCGGAAGCATCTTCCTCTGGACAGGAACGATTGAGTGAATCTCTTGTGGAGGTCTTTCTTAATGATGTTTCTCCGGATGTGTTTGCAGCTGTTCTGGCGTATATCTATCAAGATGACGCATTGGTGACAGAGGAAAACGTTTTCAGCGTGCTTTGTCTTGCTGATGTTTATCTGCTGAGTGGTTTGAAGCGTCTCTGTGCACGCATCGTTACTGGTCTCCTTGACACGGAAAACGTAGTGACCGTCCTCAAGACCGCGCGTCTCTTTAATCTGGCAAAACTTGAGGTCGATTGCTGTGAATTCATCAGCAAAAATTTGGAAAAGATAATTGAGAATAAGGAGTTTCATTCGCTGATCCTAGAGGATGCTGCATCTGTGCGAGAGCGACAAGAAACTGACTCAATTCCTGTTGTGGATGATATTCGCTTTCATTTAATGCGAGGAGTTCTTCCTTACAATGTTTCTGAGGGGGACGATGAAGAATTTGTGGATTGTGAAGGCAGCCTGCAGATGCTAGATAACTTGTTGCTGTATCTTGGTATTGAGTGTTAGAAAAATAGAAAACGTCTGAAAAAAATAATATCGATTTTGGCTTCTTACAGTCGGCCAATCACAACCGATAGATAACGAAAGCCAATGGGAATTTGAAAAAAAAATATGGTAAACGACGGTAAGCGCTGGAAACTACATGCGCGTCCTTTGCATGCTGGATAAAACAAACTTTTCAGCTTGATCTCAAAGATTAAGCCAGCCTGAGTAAGGTAATGATTGTGTCTTTGTACTTTTTAGTAAAGTTTAATAAATAGCTTAGGTTAAGCAAGAAGTTTTTAAGCATCGTTTTCCTTTTGTTTGCTATGGGAAGTAGCTTTTGCCAAAAAATCCAGGCACTCTTCAACAGTAGCGTGGTGCTTTCCACTGATGGAGAAGGATGCAATTCATTTGGCGTAAAAAAAAAAAAATTAGACTCAAAGTCTCCTTACATTGATGTAAGATACTGGAAGTGTGACGAAAGATGCGTGTATGACGCGCATTATATTAGTAACACAGGACATGTATAACTTTTCAGCATCATTAAAATATTCATGTTTTACGAGCAATATACAGCTTTGATTTGAACAGTGCAAAAAAAATCAGTCTTAAATAAATCGAAATATTTTTAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99LJ2	Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Mus musculus OX=10090 GN=Abtb1 PE=2 SV=1
Q5XIU1	Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Abtb1 PE=2 SV=1
Q969K4	Ankyrin repeat and BTB/POZ domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ABTB1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007660 (this species only)
Transcription factor family	ZBTB · all TF in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044515 all species →	Family	Ankyrin repeat and BTB/POZ domain-containing protein 1-like	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46231 all species →	ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10520	ABTB1, BPOZ; ankyrin repeat and BTB/POZ domain-containing protein 1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.