Gene detail

Detailed information of FUN_008662-T1 in Acropora pulchra

Genomic Location: ptg000002l:14150696...14168879
NR annotation: XP_029212767.2, dynein regulatory complex subunit 6-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_008662-T1

ATGACTTCACTGAAAAATTGCGATCCAAGATTGCGGAGATATCTCCTTATACATCGTCTTCCAGATGTCTTTGAGGCAATTGTTAGTGCTTTAGCTATCAACTGCCCAGATGATCCAGAGACATTTATTCTTGATAAACTCAAATGCATTATCACGTACCAAGATGTCTTGGATGACTTAAGATGGGACTCTTTTATCGATGAAAAACTGAAACCAAAGCACAGGGTGGTGAAGGCTTCTGTGTTGGATTTCCTGTGGTCTTATGAAGATGAGAATTCTCAGCCAACTCCTGAAATGTACCAAACAGCATATAACCTATATAATGGCAAATTAAAGACATCCTGTTTCAGTGCTTGGATGCGTTATCATAAACACAAGAAAAGAAAAAAAATGTTGCTGGCCAAGAAGATGCAAAATGCTCGTCTGTGGCACAAGCACAGAGTGGAGAGGATATATCTGCAACAATGGATTGAATGGGTTGCAGAGAGGAAGGAGAGATCAAATGTGATTTCCTGCAGAATCAGAAGAGTGTTGGCCATCTCTTTGTTGCGAGTTGTGTTTCGTGCATGGCACAGTGTTGCTGTTGATGCAAGAAAAACGAAAGAGTATTTTGAGAGAATCGAAAGAGGAGAAATTATTGACTCTGAGCTGGAAGGATTCTCCCGCGTAAGAGCTGACGGGAAAGATGACATTTCCTCTCTCCCAAGAAATGTTGCATTAAGGATTTTCAGCCTTGTGAACGTGGGGGACCTGGGTCGCTGTGCCCGTGTCTGTCGTAACTGGAAAGTGATAATTCAAGCAAACACGCTTTGGAGCAAGGTTGACTTTTCCGAGGTGAAACACAGTGCAACAAACAAAGTCACTTCCAGCCTGATTCACAAATGTCGTCCATTCTTGGGTCATCTCAATCTGAGGGGATGTTACGGTTTGTCAAGTGGTTCGCTCAAACTGACAGCACAATGCAAAAATCTCCAAGACCTGAATTTATCTGACTGCGCTGGAGTCAATGATGAGGTGGTCAAGAGTATTTCTATGGGCTGCACAGCTTTATTGTATCTTAACTTGGCGAACACTTCCATCTCCGATGCGTCCCTTCGATATCTGGGCAGGTACTGTATTAATCTGCTTTATCTGAGCATGGCATATTGCTCAAAATTCACAAACAAAGGCCTTAGTTACTTGGCGAATGGAAAAGGCTGCAACAAAGTGGTACACTTGGACTTGACAGGATGTGAGCAGATTACAGAAGAAGGCTATAAATTCATATCGATGGGCTGCTCGTTTTTGTCGACAATTGTTCTCAATGAATTACCAGGCCTCAGAGATGACTGTATACAGGCATTGACGTCAGAATGCCGCACCTTAAAGAGTGTGTCTATCATGAACTCCCCATTTTTATCCGATGCTTCTTTCAAGTGCCTTTCTCTGTGTAAAAGATTACGCAAGATCAGAGTAGAAGGAAATAATCGCCTAACTGATGCGTCTGTGAAGGTGTTGACCAAAAGCTGTCCCATGTTGGATCACATTTACCTTGTAGATTGCCCTAGAATTACAGATATCGCTCTCAAGGCCTTAGCTTCTTTCAAGCATCTTAATGTCGTCAACGTCGCCGATTGTGTCAGGATTCAAGACACGGGGGTCAGGCAAGTTGTTGAAGGACCTTCCGGCGCCAAGATAAAAGAACTCAATTTAACGAACTGTGTTCGAGTCAGTGACGTCACTTTACTTAGAATCGCTCAAAGGTGTCATAACCTCGTTTACGCTAGTTTCTGTTACTGTGAACACGTGACCGATGCTGGTGTGGAACTTCTTGGCACCCTCCCCTCCCTGGTCTCGCTTGATTTGTCAGGGTGTAATATTCAAGATCAGGGCGTTGCAGCATTGGGTAACAACCCAAAGTTCCGTGACATCTCACTCGCCGAATGTCCAAACATCACTGACCTTGGGCTTCAGAAAATGTGTCAACAGTGTAGACAACTTGAAAACTTCGATGTCTCCCGTTGTAAAGGACTAACTGACAACGCCATAAAGAACCTTGCGTTTTGTTGTCGATTGCTGCGGACCCTCAACCTGGCGGGATGCAGTAAGCTGACAGACTCAAGTTTGCAGTATTTGTCAGGAGTATGTCATTATCTTGAAGCTCTAGACCTTTCTGGCTGCGTTCACATTACAGACAAATCACTGCGGTACTTAAGAAAAGGATGCAAGAAGATGTCGTCTTTGACCATTCTCTACTGTAGAAACGTTACCAAGTCGGCCGTGCAGAAAATGCAAACAAAATGTAAACGTGTGCTTTACAACGCTGATGATCCATCACCCGTGCTTCCGTGA

Transcript

FUN_008662-T1

CAGACTTTGTAATTGGTTGCTTTTCTTTTTTTCGTGCAAGACTGGATCGAGCTGCCTTGTTGCCATGGTGACAAAAGCTTTTGCAAAATGGTGGACTGAAAATCGACAAATCAAAGAAATTGACGATTACAACAATAGTAATGACTTCACTGAAAAATTGCGATCCAAGATTGCGGAGATATCTCCTTATACATCGTCTTCCAGATGTCTTTGAGGCAATTGTTAGTGCTTTAGCTATCAACTGCCCAGATGATCCAGAGACATTTATTCTTGATAAACTCAAATGCATTATCACGTACCAAGATGTCTTGGATGACTTAAGATGGGACTCTTTTATCGATGAAAAACTGAAACCAAAGCACAGGGTGGTGAAGGCTTCTGTGTTGGATTTCCTGTGGTCTTATGAAGATGAGAATTCTCAGCCAACTCCTGAAATGTACCAAACAGCATATAACCTATATAATGGCAAATTAAAGACATCCTGTTTCAGTGCTTGGATGCGTTATCATAAACACAAGAAAAGAAAAAAAATGTTGCTGGCCAAGAAGATGCAAAATGCTCGTCTGTGGCACAAGCACAGAGTGGAGAGGATATATCTGCAACAATGGATTGAATGGGTTGCAGAGAGGAAGGAGAGATCAAATGTGATTTCCTGCAGAATCAGAAGAGTGTTGGCCATCTCTTTGTTGCGAGTTGTGTTTCGTGCATGGCACAGTGTTGCTGTTGATGCAAGAAAAACGAAAGAGTATTTTGAGAGAATCGAAAGAGGAGAAATTATTGACTCTGAGCTGGAAGGATTCTCCCGCGTAAGAGCTGACGGGAAAGATGACATTTCCTCTCTCCCAAGAAATGTTGCATTAAGGATTTTCAGCCTTGTGAACGTGGGGGACCTGGGTCGCTGTGCCCGTGTCTGTCGTAACTGGAAAGTGATAATTCAAGCAAACACGCTTTGGAGCAAGGTTGACTTTTCCGAGGTGAAACACAGTGCAACAAACAAAGTCACTTCCAGCCTGATTCACAAATGTCGTCCATTCTTGGGTCATCTCAATCTGAGGGGATGTTACGGTTTGTCAAGTGGTTCGCTCAAACTGACAGCACAATGCAAAAATCTCCAAGACCTGAATTTATCTGACTGCGCTGGAGTCAATGATGAGGTGGTCAAGAGTATTTCTATGGGCTGCACAGCTTTATTGTATCTTAACTTGGCGAACACTTCCATCTCCGATGCGTCCCTTCGATATCTGGGCAGGTACTGTATTAATCTGCTTTATCTGAGCATGGCATATTGCTCAAAATTCACAAACAAAGGCCTTAGTTACTTGGCGAATGGAAAAGGCTGCAACAAAGTGGTACACTTGGACTTGACAGGATGTGAGCAGATTACAGAAGAAGGCTATAAATTCATATCGATGGGCTGCTCGTTTTTGTCGACAATTGTTCTCAATGAATTACCAGGCCTCAGAGATGACTGTATACAGGCATTGACGTCAGAATGCCGCACCTTAAAGAGTGTGTCTATCATGAACTCCCCATTTTTATCCGATGCTTCTTTCAAGTGCCTTTCTCTGTGTAAAAGATTACGCAAGATCAGAGTAGAAGGAAATAATCGCCTAACTGATGCGTCTGTGAAGGTGTTGACCAAAAGCTGTCCCATGTTGGATCACATTTACCTTGTAGATTGCCCTAGAATTACAGATATCGCTCTCAAGGCCTTAGCTTCTTTCAAGCATCTTAATGTCGTCAACGTCGCCGATTGTGTCAGGATTCAAGACACGGGGGTCAGGCAAGTTGTTGAAGGACCTTCCGGCGCCAAGATAAAAGAACTCAATTTAACGAACTGTGTTCGAGTCAGTGACGTCACTTTACTTAGAATCGCTCAAAGGTGTCATAACCTCGTTTACGCTAGTTTCTGTTACTGTGAACACGTGACCGATGCTGGTGTGGAACTTCTTGGCACCCTCCCCTCCCTGGTCTCGCTTGATTTGTCAGGGTGTAATATTCAAGATCAGGGCGTTGCAGCATTGGGTAACAACCCAAAGTTCCGTGACATCTCACTCGCCGAATGTCCAAACATCACTGACCTTGGGCTTCAGAAAATGTGTCAACAGTGTAGACAACTTGAAAACTTCGATGTCTCCCGTTGTAAAGGACTAACTGACAACGCCATAAAGAACCTTGCGTTTTGTTGTCGATTGCTGCGGACCCTCAACCTGGCGGGATGCAGTAAGCTGACAGACTCAAGTTTGCAGTATTTGTCAGGAGTATGTCATTATCTTGAAGCTCTAGACCTTTCTGGCTGCGTTCACATTACAGACAAATCACTGCGGTACTTAAGAAAAGGATGCAAGAAGATGTCGTCTTTGACCATTCTCTACTGTAGAAACGTTACCAAGTCGGCCGTGCAGAAAATGCAAACAAAATGTAAACGTGTGCTTTACAACGCTGATGATCCATCACCCGTGCTTCCGTGACTGGCTGGTACTTCCTGCAGACACATGTTACTCCCAGTCTCTCAAAACACAAATCGGTACAAGAGGAGAAATGATTCACGTTTTAAAGTGTTTACAAAGCACAGAAATTTCATTGAGATCCAGTGCACATTTTCTTGCCAACAAAAGTTCTTAACGATTTTGCATTGTGTTACAAGTTTGTTCTAAATTTGCAGTAAAGGAATATTTTTAATGTGGAATTATCCATGTTGCATTTTAGTAATAAGAGAAAACAGTGGGCTTGTCAAAATAATTATTGTATTATAGAAGAATTTTGTATATAGGCATATATTTTGAGAACATTCTGAAGTTAAAAAATAAAGATATGGTTACATTTTGCAGAACACTTTTGGATACCCTTGTTTATCTTAGGACAAAGAGACCACTGACATGTTTGATTTGAGGTTTTACGTAGGAAATAAGGCTATGGCAAAGACATTTTGTGTCAGAGAAATGTCTGAATGAGCTGTCATTTTATCAACAACAAGAAGTAGTTAGGAAGTTTGAACATTGTTGCTGCATTATAAATTTCTGATTCCTTGTTCTTTTCAACAAATCAACATCCCCAATTTTCTTCATCACTGCATCACTGTATCTCAATTTTCAGTTCTTTGAATGTAAGCATTGTATGCCGCTTGTTTGAATTCAATTGCAGCCTTACGAGGATCCTCTGCCTGATAGATTCCTCTTCCAACGATGATAATATCACTTCCTTTGTTAACAATCACATCAGCTGGTGTCAGATACTGCTGACCTAGTGCGTCTCCTCCTGTGCTAAGCTGTACCCCAGGAGTCAAGTGTACAAAACCAGGATCATCCAGTAAACTTGACTGGCTAATAAACCCTATTACAAAGTCATTGTGTTTCTTTGCCATTTCAACCACTTGTGCAGTGTATTCACCAGAGGCGAGGTTTCCTGCTGAGCTCATTTCAGCTATCAATAGGCATGCTCTGCCAAGGGGGGCCCCTATCTCTTTAAGACCCTTCACAACGCCATCTCCAGGGACAGCATGCGCGTTGACGATATCAGCCCAATTGACGATGTGGTACAAGCCCTTGCTGTACTGCTTCTTCACAGTATTTCCAATGTCAGCAAACTTTCTGTCTTCAAAGACAATGAAGTTGTATTTCTCTGCAAGATTTTGAAGAGATCGGTTGAATTCTGGTGTGAAATCTACCAAAATATCAACATGTGTCTTGACAATGCAAACATGTGGTCCGACTATCTCTACCAGGCTCAAAACTTCCCTGGAGGTGGTGAAATCCACAGACACTGCAAGGTTGGATTTCTTCTCAGAAATGATCTGAAATAACCTCTTGGTGAGGGGATGTGAAGCAACCTTGCTTCTTTCTTCAAAGCCAAGCTTGCATCCGGGCTTTTTAAGTTCCTCAGGTCTTGCACATGAAGGCTGGAACTTGTTGTCGTTGAGAAACTTGCAAACTTTTTCCGCCATTCCTGAATCTAATTTCCCTTTACCACACAAGACCTCAATTACCTCTGTTAATGTTAGAAGGCTGTGTAGATTTACCCCCTGAGATTTCAGCATCTCCTTACCACCTTGAAAGCGATCTAATAACACTACTGCATCTGTTACGTGTAGATCCACCGAAGAAAGCGCCTCTACAGTTTCCATAACACTTGAACCACTCGTTACCACATCTTCAATGACTAAACATTTACTACCTGCTTCAAACACTCCTTCTATCAGCCGCTTCGTTCCATAGGCCTTGGCCTCCTTCCTCCTCATCACCATGGGGATCTGTTCCGTCACAGAAATACACGAAGCAATGGGTAAAGCGGTGTATGGAACTCCGCAAATAACAGAAAATTCCGCCTTCGAATCGGTGGCTGTTTTCCACAACATTGCACTTATTTGCCTCATGATTTCAGGATATGATACAATCACCCGCAAGTCCACATAAACGGGGGACTGCAATCCGCTCTTTAAGGTAAAATCACCAAATTTTATAGCCTTAATCTGGAACAACTTTTCTATCAATTCACTCTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CDU4	F-box and leucine-rich repeat protein 13 OS=Mus musculus OX=10090 GN=Fbxl13 PE=1 SV=2
Q8NEE6	F-box and leucine-rich repeat protein 13 OS=Homo sapiens OX=9606 GN=FBXL13 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004634 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|F-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR050648 all species →	Family	F-box/Leucine-rich repeat	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382 all species →	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10279	FBXL13, DRC6; dynein regulatory complex subunit 6	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.