Gene detail

Detailed information of FUN_008673-T1 in Dendrogyra cylindrus

Genomic Location: contig_11:1782943...1801404
NR annotation: CAH3162962.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_008673-T1

ATGGAAGGAATTTCTCATGTCCGCTCCTCACAGGAAACTGTGCCCGCATCAATGAAACAAGGCATACCTACAAATGAAGAGCTAGAAAAATTGGGTAATGAAATTGGTAAAAAGTGGAAAACACTTGGGCGTCGGCTAGACATCAATGATCCAAAGCTTCAAGAGATACAGGAAGCTCATGACGAATTGTCTGAAAGAGGATATCAGATGTTAAATCACTGGAAACAAGAAAAAGGTTCTGCTGCAACATACCAGGCTTTGTGTGACGCATTAAAACATGAACTTGTACAGCGCCAGGACTTGGCGGAGCAGTTTTGTTTCATTCATGCTCGCGTTGGACTGCGAATTGATTGTGAAACCATCTCAGGACCTGGTCAACAGGGAGGATCTTCAGAGATAGGAATTAACTCAAAGGAACACGAAGAAAAATTTCAGGGAACGACAGTAGTACCCATAACATCACGTAAGCGAAGAGCAGAGGCGACAGACGTTTCCGCGGGAGGCGTTACTATTGAAAATGATGGCCTTCCCAGTCCACAAAAAGTACTGAGTTTCATTGCGTTTAAGGTCTTCCAACCCGTTGATCCATCTAAACCAGAGGAGTTAAATAGCTTTCTAGATTATATGGAAAAAGTACGAAAAGTGGTGATTGTGGACACTCAGCAGGGGAGCTTGATAATCACAGTAGCATGCAGTTCACTGGAGATACTTGACGGACTGTGGGAAGACTATCGTACAGGCCACTTGAACGAAATGGCACAAAAATACCTCGTGACAGAGGATATCCTGCAGGAGCTTGGCCTTACTGAAGTGAAACTCACGACAACCATTCTGGAAGAGGAGTACAGGGCTTGTCGAGAGCATTTATTACAGTATTCAGttAAAGCAAGTGGCGATGATGGACAGGTTGAGCTAAGAGGAGACTTGGAATCGAGAGAACACGAGTTAGAGGAACTTGAAGAGCCGACAGAACGTGTTGACCATGGATCTTCTGTGGCACAAATCTTAAGGGTGACACCAAGGAAAATCGTGATAGCGGTGAGTGCGCCAAGTGGTGATGATGGACAACATGAAGCTGCATTCGAAAGACACAAAATTATGCCTGTGGAAGACTTTCAAGCTGAAGATTACGAAGCCTTGTTAAAGCGACAGCCATTTTGCTCGGAACAGTACCATGAGCGAGAGATCACAAGATTTTTCTGCCTTTCTTGTCAATCCTGTGTCTGTCAGCTTTGTATCGCCACGGATCACCAAAACCATGAAGTTATTACACTCGACGAAGCAGCTaacaaagagaaagaaaaaatcaTGGCTGCTGCTAAACTGACTAGACGAAAAGAGAAAGTGTTAAAGGATGAGATTCGAAAATTCGAGGAAACGATTTCCCAGCTGGAAACCAATGTGGCAACCGAAAAACGCAAAGTCTCGCAAGCAGCTGAACAAATGATTGCAAAGATTCGAGAGCGCGAGCGAGAAAAGATAACCTTCCTCGAGAAGACACGCGTGACGAGACTCGAGAATATTAACTCGGCTAACGAGAAAGCCCAGTCCCTGGTCAAAGAAATGCACGAAGCGATCGAGCTTGCAGAAAATGTGGTAAAGAGAAGCTCAAGCTTAAATATCATGCAAAACACGGAAACTTTGAAACAAAGATTTCAAGAACTTCGTGATGTTCAAGTTCCTCAACACCACGAGACCCCATTTATCATGGTTTCTGTAGAGGACTTTGGCGTGGGCGAAATCGCAACCCAAACAGCTGATGCAAGTCAGTGCACTCTTGAAGGACTGGGTCAAACTCTTCAGGCTGGTGTACAGGCGGAATTGATATTGCGCCCCAGAACACCTGAGGGGAAAATAAGTAACCAGCCTAAACTCAAAAATCAAATTGAAGTGCTTATAGAACCCCAAAAAGACGTCACAGATGTAAATGTAAGCGAAAAAGAAAATGGTGAATTCAAAGTGAATTTTACACCAAAAGTACCGGGCGCCTACAGCATTGAATTGAAAATCAATGGCAACAAACTTCCGACCTGTGCTTTTACTATGCAGGTGAAAGAACGTGAACTTGTTGTAGTCGGTGATTTGGACTTAAAGTTATTTCAAGGAGATGAGCTTCAAGGGCCATTTGGAATCGCTGTAAATACGAAAGGAAACATTGCCATAACAGATTTCTATGGACACTGCGTGTACATATTTGATAAAGAAGGCAACTGTTTAAGAAAAATTGGCAGCCATGGACATAATGCCGGACAATTTTACCACCCAGCGGGCGTTACATATTTAAATGATAACGAGATTCTGATTGCAGAAACAATGAACAATAGAATACAACTCGTAGATGTCCAGACAGGAACTTTTGTGAAAAGCTTTGGAGAACATGGTGCAGCAAAAGGAGAGTTTTCTTACCcggttgatgtttgcttggatGAACAACACCGCATTGTTGTAACCGAGTGCCGCAATAATAGGATACAGGTGATGACACAGCAGGGTGAGACTATTCAGTCCATATTTGGAGTCAGCGGCCCAGAGAATTTCAACCGTCCAAATAGCTGCATTCCTTACAAAAACATGTTTCTCGTATCTGATTCATACAATGACTGCATTAAAGTTTTTGATCAGTCAGGAACTTTCTTATACAAGTTTGGAACAAAAGGGAATCACGACGGACAATTTAACTTGCCGTGGAGTATGCTTGTAGACAGGTCAAGTAACCTTCTGGTATGTGATAGGAACAGTAACCGAGTTCAGCAGTTTACGTTAGACGGTCGCTTCACAGGCAAAACTCTCACTCATTTACCACAACCTACTGGAATAGCAACAGTACCAGATGGACGTATTCTCGTGACTAGCTATGAAGCTAAGAAAGTATACATATTGAAGTAG

Transcript

FUN_008673-T1

Protein

Uniprot

Uniprot term	Description
Q6PFY8	E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00531	Death	Death domain	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF20694	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR049341	Domain	TRADD-like N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan