Gene detail

Detailed information of FUN_008701-T2 in Acropora pulchra

Genomic Location: ptg000002l:14543735...14553216
NR annotation: XP_029185508.1, ER degradation-enhancing alpha-mannosidase-like protein 1 isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_008701-T2

CTACACTCTCGGTATGGTTGAGAATGAATCGAATTTTCACACTTTTTTCAACTTTTACAATTTTAATTACAACACAGGAGGCTTATTCACAAACTCAGCGTGACTGTAGATCAAATTCAGATGGGAAATACCGTTATTTTTCCGAGACAGAGCGCCTTAAACTTCGGGAAAAGGCGAAGCAAATGTTTTATTTTGGATACGAGAATTACATGACTTTTGCGTTTCCGAAAGATGAACTCGATCCGATTCACTGCACGGGAAGAGGCCCGGACTACGAAAACCCGTAAGTGTTGTTCTAATGGAACTGTTGCATTTAAAGCTGAGAGTGTTTAAATTCTCCCGGAAGTTTGTAGGGACTTGTCCAGTCGCACTTCATCGTCGACATACATTTGCGAAGTGCATGTTTACGTGTGTCACTTAAAAGTGTACGCATTTGGCGAAAGTTTTTTCATTTCTAAAAAAACAGGTTAATAGTTTTTCCCTCACAATAATTATACATATCTGAGTCTTTCTAGACATCTTGAAGCATGTTTTGGCTGTCATTTTTGCCTATTTAAGGCTGGCGCAGCTGGCGTGCGTTTTTAAAAGAAAAGCTATTAGAATCCCTGTAGCTAGAAATTTCTACATTATTTCGACCATTCACGGTTTTTAAAATCATTAATGACCGAGAAGGTTTCAACAGTACTTGAGTCTTAACACCAATTTTGAGTGTTTTGCTTGGGAGAAAGAGAATGTATCTTGCGTCATTATATTAAATTAAAATATTACCGTAAATTTCTTTTATCTTTTCCTTGTACAGGTCAAACATTAATATCAATGATGTTTTAGGAGATTATTCATTAGGATTATTGGAATCTTTAGGCACATTAGCAATCATGGGCAATAGTAGTGAGTTCAAACGAGCTGTTCAGCTTGTTATAGACTCCGTAACATTTCAAAAGAATAACACAGTTCAAGTTTTTGAAGCAACAATAAGAGTTCTTGGATCCTTGCTCTCAGCTCATTTGATTATCAAGGATCCCCTTCAACCCTTTGGCGACATGATGCCATCTGATTATGATGATGAGCTGCTACTTCTTGCCCATGATGTTGCAAATAGGCTGCTGGGAGCGTTTGAATTGTCGAAAACAAAAATACCGTATGCTAGGATAAATTTATGGAACGGTCTACCATCAACTTTTTATAAAGAAACTTGCACATCTGGTGCTGGTACAGTACTGTTAGAGTTTGGAATTTTAAGCAGGTTGTTAGGGGATCCAACATTTGAAAATTCAGCTAGGAAAGCAATAGCTTCTCTGTGGAAACAGAGGTCAATGGAAACTGGACTCTTGGGTAACGTAATAAATGTGGAGACAGGAGAATGGACTGGAAAGATGAGTGGATTAGGAGCTGGCCTGGATTCATTTTACGAATACCTTTTGAAGGGCTATATCATGTTTGGTGAACCAGATGATCTGAAGAGATTCAATGATATTTACAAATCCATTAATAGATATCTACGCAAGGGTCGGCCCCATTGTAACCAAGGCAACGGAAGCACACCTTTGTACTTGAATGTCCATATGGATAATGGCCAAATCATAAATTCCTGGATAGATGCGCTTTCGGCATCGTTCGCCGGAGTTCAGGTGCTAAAAGGAGACATCACTGAAGCTATCTGCACTCACGCTGTATATTATGCCATTTGGAAAAAATATGAAGCGATGCCCGAGCGGTTTAACTGGCAAACCAAGCAGTCAGAGGTCCATTTCTCTCCACTTAGACCTGAGCTCATAGAATCGACATATCTTTTACATCAGGCCACCCATCATCCATTTTACCTCCACGTTGGTCGTGAAATTTTAAAAGATATAGAAAAGCACTCCAAAGTCAAATGCGGATATGCTACTTTACACAATGTGATGGATAAAACCAAAGAAGATAGAATGGAAAGCTTTTTCTTGAGTGAAACATGCAAGTACTTGTATCTTCTGTTTGATGTTGAAAACCACGTTAATCGAGATGCTTCAAACTACATCTTCAGCACTGAGGGACATGTTTTTAAGTTGGACGCGCAATTTAGAAAGAAATCTACTGCAAGAAAAACGAGGAAATTTGTTCAGAAAGCTGCCAAAACCTCCTACACTCGCTCATCTGGAAGTAGATACAATGAGAGTTCAGGATGTGTTCTTTTTTGTGGTAACTTCAACAATCCTCTTCCAATGGATATTCAATATTGGGAGGCAGTCGAAGCAGCTGTTGGCGTCTAAAACCACATGCAACCCTGACCTCGTGGCTGGCTTCACTGGGGCCATGAATTTGAAATTCAATTTGTATTTACGGTGGAAATTGTGGTTTTAAAAGCATTTATTTTTATAGTATGGCCCAACCTAGCCGGGAAACCAACCTGTGCAACTGAATTTAGTTGGCCACATCTTGCAAATTAATACTTTCTCAAACATAATTTCATCAATAAATATAAATTTTAAATTTAACGGCCATGCGAGACGTGGCATTGCGTCTGGGCTTCCTGTGCTAATAACAATACGAAATACTCGTGGAAACAGTGACTGTTGTCCCTCCACCAGAGGTTTTAGCTGCCGTTTACAGGAAGAAACCGTGAATGTTCACATTAAATTGTTATGTACTCCTTGCCTGGCATAAACTCGACCTGGTAACAAGGATGTGTCTGGCAGTTTGCCGTAAAATTTGAGACACAAATTTACAATTTTTAATTCTAAAGGCATCAAGGGAAGTTCTACTTGTGACAAGAGAAACTGTGTTTGGGCAAGATATTAGGGGCTCTAAACATATAGAAGTTTATTAATTTATTTATAAAATGTGTTGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q925U4	ER degradation-enhancing alpha-mannosidase-like protein 1 OS=Mus musculus OX=10090 GN=Edem1 PE=1 SV=1
Q92611	ER degradation-enhancing alpha-mannosidase-like protein 1 OS=Homo sapiens OX=9606 GN=EDEM1 PE=1 SV=1
Q9FG93	Alpha-mannosidase I MNS4 OS=Arabidopsis thaliana OX=3702 GN=MNS4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004477 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01532 all species →	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044674 all species →	Family	ER degradation-enhancing alpha-mannosidase-like protein 1/2/3	Interproscan
IPR001382 all species →	Family	Glycoside hydrolase family 47	Interproscan
IPR036026 all species →	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45679 all species →	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004571 all species →	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:1904380 all species →	Biological Process	endoplasmic reticulum mannose trimming	Interproscan
GO:1904382 all species →	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10084	EDEM1; ER degradation enhancer, mannosidase alpha-like 1	-	Lectins	ko04091	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.