Detailed information of FUN_008737-T1 in Siderastrea siderea

Genomic Location: contig_6:15160281...15170735
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05090
all species →		VKG_CarboxVitamin K-dependent gamma-carboxylaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007782
all species →		FamilyVitamin K-dependent gamma-carboxylaseInterproscan
IPR011020
all species →		DomainHTTMInterproscan
IPR011051
all species →		Homologous_superfamilyRmlC-like cupin domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12639
all species →		VITAMIN K-DEPENDENT GAMMA-CARBOXYLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008488
all species →		Molecular Functiongamma-glutamyl carboxylase activityInterproscan
GO:0017187
all species →		Biological Processpeptidyl-glutamic acid carboxylationInterproscan
GO:0019842
all species →		Molecular Functionvitamin bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10106GGCX; vitamin K-dependent gamma-carboxylaseEC:4.1.1.90
Ubiquinone and other terpenoid-quinone biosynthesisko00130deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_008737-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
9.6Max TPM
0.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 6.83 9.57
unannotated 1 1 7.49 7.49
live coral tissue/skeleton 1 1 6.86 6.86

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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