Gene detail

Detailed information of FUN_008747-T2 in Siderastrea siderea

Genomic Location: contig_6:15291100...15306775
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_008747-T2

gcgcactgttggagaaatgtggagatatatagcgctagtaggcactttagtatctatgcacgagtttaactctcttaaatgttcggtgaccccatattttcttttgataaatcactttgtctgtccattatctacattttgagaaaaattaaagaaaatctgtattgtggaagtttgatttttttcaacttttctgccctcgcatcatcgaattatgctattattgtagctgcaaggtgttcgcaaaagtccatctcagaggatgagtttaactaaaaggatgacaccagctcacattgtttacttgacagacccacttaaataaagtttggctaagaaagtgggtctacagcgaataatttttaatatttttaaactaacaagcattgaggctatgtcgagttgcgagggccgatttgtcgaaattagggtagttttccacgcgctttattttgaaaacgaagtcggtgacccctcaatttttttgcatttctgacataggtaactcattatcggactgtagccaaagtatgaaaaaaatctgtattgtagaagtttttcgcgcgaacgtccttaagttaTGAAGGCAGGGATAATCTCTGTTTCATAGATGGTAGGCGGAAAAAGACTTTCCCTTTCAGGTGTGTTTTTGACGCAGTCACAGCGCAGCCCAGTTCCTGGAGGGAATTCCGGTTGCCACCCAGGGCCCCATTGTTGTCTTTTACAGGTAATGCCATGTATAGAAATGTAAGCCCTCAAtgatgctgttgttgttttctcaCGCTGACAATAATGTACCATTTTCTCTTGGTTTGATTCGCTCATTCAAAAGCATGCGCAGAGAAAGAAAGCTTCTGATCAAGTCACATCATTTGCCTTTATTTCGCAATGATATGTGCTAGCAGGGAGGAGAGGTATGGGAAAGTTGTTCTTCCGTTCGCTCGATACCAGGCACTCAAGAACTTTGGAACACGTGATCAAAACGGGAGCCGGAGACCTGTATGACAGACGATGGTGACACTAACTACTTGTTGTGGGTCATAACTTGGACCTGATTTGCACAACAACATGCATTTTTCCGTCCCCGATACCGTCGAGCTTAAAGACAAAAGTGGATCGAACTATTTAGCTTACAATGTTCATATCAATGGCTCATATCACTGTGGCATCAGATATTCTGACCTTTATCAATTTAACGAACAGCTGCGCAAAGAGTTTGGACCCAGAATGTCAGCAAAGTTTCCCCCAAGAAAGCTGCTTTCTTTGACGCCTGTGCAAGTTGAAGAGAGGCGAGATCAGCTAGAAAAATACCTGCAAGCTGTCTGTCAGGATCCTGTGATTGCTTCAAGCACACTGTTTTCAGGATTCTTTCTAAATGCTCAAAAGGAATCCATGAAAGCTTCTCCGGAGAATGTTCAGCTTGATGTTTATCTGATGAATGGACAAAAAGTTGCACTAAATATCCAATCTACTAACAGAACAGATGATGTGCTTGAGGCATTAATGGCAGAAATTAATCTCAGTGAAGACCTTGTGTATTATTTTGGACTTTTTTTGATCAAAAGAGCAGAGGATGGAGAAGCAGCTATTGTGAGGAGATTTCAAGACTACGAAGCACCCTATTTGACGATGAAGCAACAAACAGGGACCTCACGCATGGCCGTCAGGAAAACGCTGTGGGATCCACAAATTGAGGAAAAGATTGTTCAAGACAGAATAGGAATGAATCTCTTGTATGTTCAGGCAGTCAGTGACCTGGAAAAAGGCTGGACATATGGTTCTAAGGAAGATCACAGTAAACTAGCTCAACTCAAACAAAAAGGTGCAAAACTTGAGTTCTTGCAACTTGCCAGATCACTGAGATTTTATGGGTACATACAGTTCAAACCTTGTATAACAGATTACCCTGAGGAGGACACCAGAGTAATCATTAGTATTGGAAACAGAGAACTCAATTTTAAGCTTCAAACTCCAGATaaCAAAGTACAAGAGGGAAGCTTCAAGGTCACCAGAATGAGATGCTGGAGAATTACATCAACGagtgaaataaatgaaaatggaGAAAAAGAAGAGCATCTGGAGCTATCATTTGAATATCTTTTGAAGAGGGATCATATGCAGTGGATAACAATTTTTAGTGATCAGGCAATCCTGATGAGTCTTTCTCTTCAAAGtattgtggatgaaatcctgagaATAAAACAAGGAAAACCAATTAAAAGGCCCAAGGATCGTTCAAAGACCAAGAAGGAAGTAGTTCCAGACTTTCAGCGCCATGGTTCTATTTCATCAGATGCATCAACAGAGGGTGATacagaacaagaaaacaaagctGTGAACCACAAAAACAATAATTCAACTCCTCCATCAAAAAGCCCAACAACAACACGGAAACCAACTTCTCCAACAAAGAAAGTGGCCAGACAGTTATCCTCGGGCAAAACACAAGTACCCAAGCAGAAACCACCGCCCATCAGTACTGCTGCCATGATGACAAATGAAGTGTTTGAAGGGATAGGAGATGATGACCTCTAAGCATTACAAAAGCTCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21271 all species →	SNX17-31_F2_FERM	Sortin nexin 17/31, FERM domain, F2 lobe	Domain	Interproscan
PF21273 all species →	SNX17-27-31_F1_FERM	Sortin nexin 17/27/31, FERM domain, F1 lobe	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF18116 all species →	SNX17_FERM_C	Sorting Nexin 17 FERM C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028666 all species →	Domain	Sorting nexin-17, FERM domain, N-terminal subdomain	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR037836 all species →	Domain	SNX17, atypical FERM-like domain	Interproscan
IPR048767 all species →	Domain	Sortin nexin 17/31, FERM domain, F2 lobe	Interproscan
IPR037831 all species →	Family	SNX17/27/31-like	Interproscan
IPR048763 all species →	Domain	Sortin nexin 17/31, FERM domain, F1 lobe	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR040842 all species →	Domain	Sorting nexin-17/31, FERM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12431 all species →	SORTING NEXIN 17 AND 27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:1990126 all species →	Biological Process	endocytic recycling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17929	SNX17; sorting nexin-17	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.