Detailed information of FUN_008749-T2 in Siderastrea siderea

Genomic Location: contig_6:15315676...15345598
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 activity RING|PHD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20826
all species →
PHD_5PhD finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013087
all species →
DomainZinc finger C2H2-typeInterproscan
IPR019787
all species →
DomainZinc finger, PHD-fingerInterproscan
IPR043449
all species →
FamilyPHD finger protein 20-likeInterproscan
IPR002999
all species →
DomainTudor domainInterproscan
IPR014002
all species →
DomainAgenet domain, plant typeInterproscan
IPR016197
all species →
Homologous_superfamilyChromo-like domain superfamilyInterproscan
IPR013083
all species →
Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001965
all species →
DomainZinc finger, PHD-typeInterproscan
IPR019786
all species →
Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR011011
all species →
Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15856
all species →
PHD FINGER PROTEIN 20-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006357
all species →
Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016573
all species →
Biological Processobsolete histone acetylationInterproscan
GO:0044545
all species →
Cellular ComponentNSL complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K18402PHF20; PHD finger protein 20-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP