Gene detail

Detailed information of FUN_008795-T1 in Acropora pulchra

Genomic Location: ptg000002l:15700613...15709530
NR annotation: XP_044182861.1, threonine synthase-like 1 isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_008795-T1

ATGGGAAGTCCTGGAGCAGGAAAAACAACTGTTGGAAGGATTCTTGGCCATCATCTTGGCAAAGAAGTTATCGATGTTGATGATGATGTCTTGGAGAAAGTGTGGGGAATTTCAGTGGCAGAAAAGTTATCCGAAGTTGGATCCCATGGCTTTGTTGATGCGGAGGGTCAGGCAGTCATGCAATTTTCCACCAGCGACTCGGTCATTTCTCTGAGCGGTTCCAATCCGATGAACAGAGAAGCCATGAATCACATTAAATCCCTTGGTGATGTCATCTACTTAGATGTCGCAGATGATGACATCTTAAATCGTCTGGCTGCGATGAAAGTGAACAGAATTGTTGGACAAAATGAAGGAATCAGTATGAGTGAAATTCTCCAGTATCGGAAGCAATTTTACGAATCCAGCTACGACGTGCGCGTTTCATGTGCGCGAGGTGATTCGGCCGAGGAAATTGCTAACAAAACTTTGAAAACACTGAAGGAGACACAGGACGAGATAGGGTTCATCAGCACGAGAGAAGAACGCGCGGAAACAGATGAAAGACCAGGATTTTTAGATGTTGTTTTAGAAGGTCTGTCCCCTGATGGAGGTCTTTTTGTACCGAGGAGACAATTGCCATTCTTTACTAAAGGTCAGTGGGAAAGGTTAGTGGATTGCAGTTACCAGGAACGAGCGTTGCGTATCTTAGAGGCCTGGGTGTCACCAAGTGAACTCCACCCCTCCTCCCTGCGGACAATGATCGACTTAGCCTACTCCACTAATTTTCAGCACGAAGCCATTGCGCCTGTCATCAAGCTCAATGACCAGTTCTTCATTCAGGAACTTTTCCACGGCCCCTCAGCTTCGTTCAAAGATCTTGCTTTGCAGTTAACGCCACAGTTTTTCAGCGAAGGAGTTTCCAGAAAGGAAACCAGCGGTGAACAAGTAAAATATCTGATACTTGTTGCTACTTCAGGTGATACAGGAAGTGCAGTGCTAGAGGGGTTTAAAGGGAGCTCCAACATTAAAGTTATGGTCCTTTATCCGCAAAAAGGAATTAGCACGGTACAGAAATACCAGATGACAGCTGCCGATGGGAGCAACACGTGCGTTATTGGTGTAGAGAGTGACTTTGACTTTTGTCAGTCTTCGATAAAGACAATCTTTAACGATTTGCCTTTCAGCAAGAAACTTATGGACTCCCACAACCTGAAACTAAGCGCTGCTAACTCGTTGAACTGGGGAAGGCTTTTGCCCCAAGTTGTTTATCATGCTTCGGCTTACTTGGATCTTGTAAAATCAGGGGTTATCTCGATGGGTGAAGCTGCAGATCTTTGTGTACCTACTGGGAACTTCGGAAATATTCTGGGAGCTTATTATGCCAAGACCATGGGCATACCGCTGAACAATCTGATCTGCGCTTCAAACGAGAACAATATTCTGACGGAGTTTTTTCGCGCCGGGTCTTACAATATGGCTTCGCGTCGACTAAAACAGACCATTTCCCCGTCAATTGATATACTGAAGTCCTCGAACTTGGAAAGGCTCCTTTACCACGCAACAGAGAACAACGGAGCAGCAGTAGCGCATTGGATGGCGTCTTTAGAAGAAGACAAGTATTTTAAGGTTTCGGATGACATTCGCAAGGAGCTGTCTACCATATTCAAAGCTGACTGTACGACATATGACAAGTATCTCAAAACGCTAAAATCCACACACGAGCAAACGGGTTACATCTTGGATACCCATACAGCAGTTGCTATGGATATAGCGAGTCGGTTTGCGCATGCCAGCAGACCAATGATTGTTTCAGCGACTGCGCATTACAGCAAGTTTGCTTATGATGTGCTTAGGGGACTGGGAGAATTCCCCTCGTGCCAGGAGCCTCGAAGTTTGTTTTCCAGTTTGAAGAAACTCGACGCTCGGCCTGCAATGCATGCGAACCTAGAAGCGGTTGTCAGTCGTCCGCAAATACACAAAGGCCAATGTGAAGCTAACGTTAATGCTGTTATGAACCAGGTTGAAAGTTTCGTAGAGAAGTAG

Transcript

FUN_008795-T1

AAGCTACTCAAGTAATGCAACAAGATTTCAAGATGATAGAAAGAAAGGCAACAACATTATTCTCATGGGAAGTCCTGGAGCAGGAAAAACAACTGTTGGAAGGATTCTTGGCCATCATCTTGGCAAAGAAGTTATCGATGTTGATGATGATGTCTTGGAGAAAGTGTGGGGAATTTCAGTGGCAGAAAAGTTATCCGAAGTTGGATCCCATGGCTTTGTTGATGCGGAGGGTCAGGCAGTCATGCAATTTTCCACCAGCGACTCGGTCATTTCTCTGAGCGGTTCCAATCCGATGAACAGAGAAGCCATGAATCACATTAAATCCCTTGGTGATGTCATCTACTTAGATGTCGCAGATGATGACATCTTAAATCGTCTGGCTGCGATGAAAGTGAACAGAATTGTTGGACAAAATGAAGGAATCAGTATGAGTGAAATTCTCCAGTATCGGAAGCAATTTTACGAATCCAGCTACGACGTGCGCGTTTCATGTGCGCGAGGTGATTCGGCCGAGGAAATTGCTAACAAAACTTTGAAAACACTGAAGGAGACACAGGACGAGATAGGGTTCATCAGCACGAGAGAAGAACGCGCGGAAACAGATGAAAGACCAGGATTTTTAGATGTTGTTTTAGAAGGTCTGTCCCCTGATGGAGGTCTTTTTGTACCGAGGAGACAATTGCCATTCTTTACTAAAGGTCAGTGGGAAAGGTTAGTGGATTGCAGTTACCAGGAACGAGCGTTGCGTATCTTAGAGGCCTGGGTGTCACCAAGTGAACTCCACCCCTCCTCCCTGCGGACAATGATCGACTTAGCCTACTCCACTAATTTTCAGCACGAAGCCATTGCGCCTGTCATCAAGCTCAATGACCAGTTCTTCATTCAGGAACTTTTCCACGGCCCCTCAGCTTCGTTCAAAGATCTTGCTTTGCAGTTAACGCCACAGTTTTTCAGCGAAGGAGTTTCCAGAAAGGAAACCAGCGGTGAACAAGTAAAATATCTGATACTTGTTGCTACTTCAGGTGATACAGGAAGTGCAGTGCTAGAGGGGTTTAAAGGGAGCTCCAACATTAAAGTTATGGTCCTTTATCCGCAAAAAGGAATTAGCACGGTACAGAAATACCAGATGACAGCTGCCGATGGGAGCAACACGTGCGTTATTGGTGTAGAGAGTGACTTTGACTTTTGTCAGTCTTCGATAAAGACAATCTTTAACGATTTGCCTTTCAGCAAGAAACTTATGGACTCCCACAACCTGAAACTAAGCGCTGCTAACTCGTTGAACTGGGGAAGGCTTTTGCCCCAAGTTGTTTATCATGCTTCGGCTTACTTGGATCTTGTAAAATCAGGGGTTATCTCGATGGGTGAAGCTGCAGATCTTTGTGTACCTACTGGGAACTTCGGAAATATTCTGGGAGCTTATTATGCCAAGACCATGGGCATACCGCTGAACAATCTGATCTGCGCTTCAAACGAGAACAATATTCTGACGGAGTTTTTTCGCGCCGGGTCTTACAATATGGCTTCGCGTCGACTAAAACAGACCATTTCCCCGTCAATTGATATACTGAAGTCCTCGAACTTGGAAAGGCTCCTTTACCACGCAACAGAGAACAACGGAGCAGCAGTAGCGCATTGGATGGCGTCTTTAGAAGAAGACAAGTATTTTAAGGTTTCGGATGACATTCGCAAGGAGCTGTCTACCATATTCAAAGCTGACTGTACGACATATGACAAGTATCTCAAAACGCTAAAATCCACACACGAGCAAACGGGTTACATCTTGGATACCCATACAGCAGTTGCTATGGATATAGCGAGTCGGTTTGCGCATGCCAGCAGACCAATGATTGTTTCAGCGACTGCGCATTACAGCAAGTTTGCTTATGATGTGCTTAGGGGACTGGGAGAATTCCCCTCGTGCCAGGAGCCTCGAAGTTTGTTTTCCAGTTTGAAGAAACTCGACGCTCGGCCTGCAATGCATGCGAACCTAGAAGCGGTTGTCAGTCGTCCGCAAATACACAAAGGCCAATGTGAAGCTAACGTTAATGCTGTTATGAACCAGGTTGAAAGTTTCGTAGAGAAGTAGTTCTCACCGGCGGCAGCGTGGCCGAATTCGTGTCCTGCTCTGACCACTGAACTAGTGCACAACCATCTGCTCTGCTACCTGCCAATTGGGAATCTTAACCTGTTAAGTATGTTTCAGTAGTTTTGTTTCATTGGCCTTGAAAAGCCCCAGCGGCTAGAGGTTAGTTAAGCGTGCATGCATGAAGTTGTTCTTGTGAATTTTATTATTTAACGCTAGAATCGATGAAGGCACGTTTATCGGCCCTGGGTTGCAGAGAAATTCTAGAATGATACATCACGAAGATGAAGGTATTGGCCAAAATCTCGATCTCTTTTGGTTGTAAAATATGTATTTCTGACGGTTGAGCGTGCGAATAAGGCAGAAATTTATATTTCTACGGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IYQ7	Threonine synthase-like 1 OS=Homo sapiens OX=9606 GN=THNSL1 PE=1 SV=2
Q9BH05	Threonine synthase-like 1 OS=Macaca fascicularis OX=9541 GN=THNSL1 PE=2 SV=1
Q5R5P3	Threonine synthase-like 1 OS=Pongo abelii OX=9601 GN=THNSL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006549 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01202 all species →	SKI	Shikimate kinase	Domain	Interproscan
PF14821 all species →	Thr_synth_N	Threonine synthase N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036052 all species →	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR000634 all species →	Binding_site	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	Interproscan
IPR004450 all species →	Family	Threonine synthase-like	Interproscan
IPR000623 all species →	Family	Shikimate kinase/Threonine synthase-like 1	Interproscan
IPR031322 all species →	Family	Shikimate kinase/gluconokinase	Interproscan
IPR029144 all species →	Domain	Threonine synthase, N-terminal	Interproscan
IPR037158 all species →	Homologous_superfamily	Threonine synthase, N-terminal domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43515 all species →	THREONINE SYNTHASE-LIKE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_008795-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.