Gene detail

Detailed information of FUN_008805-T1 in Colpophyllia natans

Genomic Location: contig_11:2892413...2903449
NR annotation: CAH3141681.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_008805-T1

ATGCTGTTCGAGGAAGACAGAAAACCTTTAAAAGCCGCAGATTGGGTCATAATAGCATTCTACTTCGTTGCCTGCATTCTTGTGGGCCTCTGGACCAAGTTCAGACAGCAGAGAGGAAAAGCTGAAACAGCAGAAACGTTTTTCTTAGCTGGAAGATCCATGATGTGGTGGGCGGTTGGACCCAGTTTGTTTGTCAGCAACATCGGCAGTGAGCACTTTATTGGGTTGGCTGGGTCAGGAGCTGCTACAGGGATTGGTGTAGGATCATATGAGTGGCAGGCGCCATTCGTCTTGCTCCTTCTTGGATGGGTTTTTGTGCCAATCTACCTCAAATCTCGTGTGTATACGACGCCCGAATACTTGCTCAAGAGATTCCACAGTACTAAGATTCGAACATGTTTGACAGCAGTGGCCCTGATCTCGTATGTCCTCACCAAAATTTCTGTCGATATCTATGCCGGAAGTGTGTTTCTGTATGAGGCTGTTGGCTGGAATATTTACCTCTCTGCTGCTTGTATTCTGGCCATCACAGCAGTGTACACAGTCCTGGGTGGTTTAACTGCTGTATTCTTCACAGACGTGTTGCAGTGCACCATAATGATCATTGGTGCCATTGTTGTCGCTATAATGAGCTTTTCGAAAGTTGGCGGGATGGATGGTTTATGGGAGAAATATGGTACTGCTATTGGACAATCCATTACAACCGCTACTGCTGCACCAACAACGGCTGTCAGCAATTTCACAACAGTAGCTGCCTCTTTAAGCACCGTGACGTCGACAGCTTCGAATCACAGCAGTAACCAAACTGTTGATAGCTGCTTCAAGCTGACCCCTTATTGGGGTAACCTGGTACGACCATTAGATGACCCAGACTACCCCTGGTTGGGATTGTGGACATCTCTATTCATTACATCAGTGTGGTACTTTTGCACTGACCAGGTTCTTGTGCAGCGTGCTCTGGGAGCCAAAAACCATATTCAAGCCAGAGCCGGGACGATATTTGCAGGATTTCTGAAAATCCTACCCATGTTTGTTATGGTGATGCCTGGCATGATCAGCCGAGTCCTGTTCCCTAACTCCATTGCTTGTCCGGACCCTGAGAGCTGTAAGCTTGCCTGTGATAACAAATGGGGTTGCACCAACAATGCCTATCCTAGCTGCAGACTGGTGTTAAACATCCTGCCTACTGGCATGGTGGGCTTGATGATGGCTGTTATGATGGCAGCAGTCATGTCATCTTTGTCTTCAGCATTTAACAGCAGTGCCACCATATTCACTGTTGATGTTTGGCTTCGACTAAGACCTCGGGCCCGAGATAGAGAAAGAATCATAGTGGGTCGAATAGTCGTGGCTATTCTTGTTGGCATCAGTTTGTTATGGCTGCCCGTCGTTAAAGGTTTTGCTGGAAGCCAGCTGTTTGTGTATCTCCAGAATATCCAGTCGTACCTGGCTCCGTCGATCTCGTCCATGTTCCTCTTGGGAATCCTGTGGACTGGACTCACGGAATATGGAGCAGTCGCGGGTCTTTTGGTCGGGTTTACCATGGGCATTGTTAAGTTTATTGTGGAGAATGTGTATACACGGCCACACTGTGGCGAGGAGGACACACGCCCAGGGTTTGCCAAGTTGCATTTTATGTATTATTCGAATATTCTGTTCGCCATCAGCGTATTAATAATGGTAGTGGTTAGCTTATTCACCAAAGAAATCCCACGAGATGAGCTAGGTGGCTTGACTTGGTCCACCATTAACGATCCTCCCCTCTCACATGGAGCGATTGGAGAGAACGTTGAGAGAGGAAACGACGAGAAAACAGACAACGGGAAAATGCAAATGAAGGGCCTGACTGAATCTAATCTGCCTGATACACCGTCTGCTTCTATGGCGGTGTTTCACCCTGAGGAGAAAACAGAGAAGATCTTCCTTCCTGTAGTTCAGTTTCCGGTTGAAGAGCCCTGGCTGAAATGGCTTTTACGAATAATGACTGTGGTGTTGATCATGTCTCTGATTGCACTGTGGGTAAGATTTGCGTAG

Transcript

FUN_008805-T1

Protein

Uniprot

Uniprot term	Description
A8WHP3	Sodium/glucose cotransporter 4 OS=Danio rerio OX=7955 GN=slc5a9 PE=2 SV=1
Q3ZC26	Sodium/myo-inositol cotransporter 2 OS=Bos taurus OX=9913 GN=SLC5A11 PE=2 SV=1
Q28728	Sodium/myo-inositol cotransporter 2 OS=Oryctolagus cuniculus OX=9986 GN=SLC5A11 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00474	SSF	Sodium:solute symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038377	Homologous_superfamily	Sodium/glucose symporter superfamily	Interproscan
IPR001734	Family	Sodium/solute symporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11819	SOLUTE CARRIER FAMILY 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0005412	Molecular Function	D-glucose:sodium symporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14391	SLC5A11, SMIT2, SGLT6; solute carrier family 5 (sodium/myo-inositol cotransporter), member 11	-	Transporters	ko02000	deepkoala