Detailed information of FUN_008897-T1 in Acropora pulchra

Genomic Location: ptg000004l:357152...358620
NR annotation: XP_029195667.2, rRNA-processing protein EFG1-like isoform X4 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A5DID3rRNA-processing protein EFG1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=EFG1 PE=3 SV=2
A3LNR4rRNA-processing protein EFG1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=EFG1 PE=3 SV=1
Q6BH91rRNA-processing protein EFG1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=EFG1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008422 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10153
all species →		Efg1rRNA-processing protein Efg1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050786
all species →		FamilyEFG1 rRNA-processingInterproscan
IPR019310
all species →		FamilyrRNA-processing protein Efg1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33911
all species →		RRNA-PROCESSING PROTEIN EFG1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000462
all species →		Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0030688
all species →		Cellular Componentpreribosome, small subunit precursorInterproscan
GO:0006364
all species →		Biological ProcessrRNA processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K26536RPS19BP1; active regulator of SIRT1-Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP