Gene detail

Detailed information of FUN_008904-T1 in Dendrogyra cylindrus

Genomic Location: contig_11:5957814...5970716
NR annotation: XP_020623171.1, uncharacterized protein LOC110060719 isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_008904-T1

ATACTTCCCGGAAGTATTTCCGGTTTTGATTTATGTTTTTCACCTAAATGTTTTTTATTTGAACTAATGATACTACAGCTCTACTACAGCGCTTTTAGCCAGAAAAGAAATAATACATATTCGACTTTATGGGCAGTCGCGGCTTGGATCGACGTCGGCCGAATGGCTCAGGAGAACGATCAGCTTACCGCCGGCTCAAGGAACAAAATCATGAGGAAATAGACAGTGAATTTGTCCAGGTGTTAAGTGATTTGAAACCCCACGTTATTGGAATGGGTGGACGTTTCGTTAAAGAAATTATGATCAAATCAGGGGCAAAAATTACTTCGGAGAAAGAAGACGACGGCTTTACAGTCATAGGTGATGCAGACCAACGAGCATGCGCTAAGAATCTAATTTTAGAAAAAGTGTGCGAAATACAACGCAGGAAAAATACGGCACCTCCTCCTGGCGAACTAGTGCCGGTTCCAGCTGAATACAAAGGACTAGTAATAGGTAGAGGGGGAGATAAACTTCGAGAGATCAGCACTCAAACGGGAGCAAAAGTGATTCTTAAAGTACCGGGTGGGAAAGTGTCAGCTGAAGTGTATATAGTCAGTGGAACAGAAGAACAGAGGCAACTGGCAAAACTGAAGATAGGACTGATAATTGCTGGAGCAAGACACAGAGGTGTGGAAAGTGAATTTAACAAAGTTTGTTGTTTCATCGATGGCTGGAATCTCCCAAATATGTGTGCATTGAAGCTTTTCCATGTTCTAGATCGTATGTTGCTTCCAGCTGCGGATGCGCAGTATCGGCTGAAACTGGCTGAAGAGTACAAAATACAGGAATCCTGCAGCTCCAACAGTGACTCGAGCTATCTGTTTCAACTCGCGGATGCAACTTTGGATTCGCTTCGTAAGATCAAGGATAACAAGGAAACTAAAGAATATCCGAAGGCAGACATATGGTGTCATTTTGGAACTGCCAATATCCGGGGACCTGACGAAGACGAAGCTGACGAGGGAGAGTGGAGCATTGACCAGGCAAGAGAAAAGTTTCAATCATCAAATGGAGAGAATTACTGGAAAGTTGCATTTAATGGTGGAGTGAATTTTGATGAGAGAATCCTAGATGAAATTTTCTGTGAGAAAACTCCTGAAGATTATATAGCAAGATACGATTTGACGTACTTAGTACCATTTGGTCATGAGATCAGATGCAAGGTGTGGGTCGCAAAGAAAGACGTTCAAAAAAGGTTGGAAGACATACAAATCCCTTTTAGTGACGTCAAGAACATCTTGGAGAAGATCCACTTTGATGATGAAATAACACGGTCACGATGCCGAGGATGGCTGGTTTTAGCATCTCGAAAATACTTGGTGGCTGACATTATGTTTCCCGGCTGCGAATTTGATTGCAGATTCACCATTCGCGGACGAACAGAGTGCGCTCTATCCGCAGACTATGCAGCCAAAGAAGAAGTAAGACATGTTTTGTCACAATACCTTTCCGGATTAACTCTGACGGATGAAGACGCTTTTGGACTACGCCTTCCAGAGAAGGAGATACCCAAGGGATTTCACTTGATCCATAAGCGGTCCTCTAAACGCAGTATGTACACCACTAATTCAGGTTTCGCAATCATTCTTTCCAAGGAGTGCTCGTGGGGCGGCGACTTTAATGAAGAGAAAGTTAAACAAAAGGTAAATAGAGAAGTTGCAATTTCAACCATTAAAGTTTGCTAATAGCTTAAGCTTCAACCAATGTTACCTAGTTGAGTAGCTTCTGTCAAAGGTCTGCTCATTTCAACGGAAGCCTGTACGAACAGAACGCGCGTGTAGGTTGCGCCAGCTCCTTTTACAACAGCCGACCGCGGACCGGTTAACTTAGTTGGCAAAGCGCCGGACTACCGTGCGGGAGGTTGACGTTTCGAGCCCCACACTGGatcaacactcagggtcttaaaataagagagaagaatgtgctgcctttgcAATTACATCTGTTTCGTTTCTCGAATAAGAACGATACGCCGTAGGCAGGGGACGCTagagaacccacacacttaccGCACAGAGTAGGGCACGGAGTTCCGGTGTTGTGTTCTGACCTTGTTCTGAAATTGCATCGGGGTATCTGCAAAAATTTCCTCATTTGTTGTAAACTGCTTGATGCAGTCTGGTCAGAGTCCCCCACAAAGTGTTGTCAAGCGCATTAGAAGATATGGCATATGGAAAATGCGCTGTATAAATACCACGTCAAACAACAGCTATGTGAATAACTGATTTACTCATCAGCTGCAGGTTCCCTTGCAACGCTGCTTGAACTGAGCCTAACCCAAGAGGACTTCGTGACATTGAGTGTAGAATTAACAGCGAGATTGGTCCAGTTTTCACAAGAAGAACGATGAATAATTCCGCGGAA

Protein

Uniprot

Uniprot term	Description
Q32PX7	Far upstream element-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Fubp1 PE=1 SV=1
Q96AE4	Far upstream element-binding protein 1 OS=Homo sapiens OX=9606 GN=FUBP1 PE=1 SV=3
Q91WJ8	Far upstream element-binding protein 1 OS=Mus musculus OX=10090 GN=Fubp1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004087	Domain	K Homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24457	SLFN12, SLFN12L; schlafen family member 12	-	Chromosome and associated proteins	ko03036	deepkoala