Gene detail

Detailed information of FUN_008979-T1 in Acropora pulchra

Genomic Location: ptg000004l:1073004...1079920
NR annotation: XP_029198927.2, T-complex protein 1 subunit alpha-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_008979-T1

CCTTCTGCCCATAACACAATGCGGGCACACAGCACATGCTTCACAATTTTTCAAAATGTCTTCCGCGCCGAGTTCAGCCGAATTGCTCCACGTTGGAGGGGAAAGAACGACTGGAGAGAACATAAGAGTGCAAAATGTGACTGCTGTGACAGCGATAGCAAATATTGTGAAGAGTTCCCTTGGTCCTGTAGGTTTAGATAAAATGCTGGTTGATGATATCGGGGATGTTACAGTTACCAATGATGGAGCTACAATACTGAAGCTACTTGAGGTGGAACATCCTGCTGCTAAGGTCTTGTGCGAGCTTGCTGACCTTCAGGATCAAGAGGTAGGGGATGGAACAACGTCAGTCGTCATCCTTGCTGCAGAGTTTCTAAGAGGTGCTAATGAATTGGTGAGACAGAAGATTCACCCAACGTCGGTCATTAGTGGCTACAGATTGGCATGCAAGGAAGCTTGCAAGTACATCCAGGAGAACCTAACCATTAATGTGGAAGAGCTTGGTAAAGAAAGTATTGTCAGTGTCGCCAAGACGTCAATGTCATCAAAACTGATTGGTCAGGTCTCTGACTTCTTTGGCGAAATGGTTGTCGATGCTGTCATGGCTGTCAAGCGAACAGGAAACAAAGGAGAGGCCAAGTATCCCATTAAAGCAATTAATGTCCTCAAGGCTCATGGAGGGAGTGCTAAGGAAAGTGTTCTTGTAGATGGATATGCTTTGAACTGCACCATTGCTTCTCAAGCCATGCCCAAGCGAGTGGAGAATGCCAAAATTGCTTGTCTGGATTTCAGCCTGCAGAAAGCTAAAATGCATCTTGGCGTTAGTATTGTGGTTGAAGACCCTGAGAAATTGGAAGCCATAAGAAAGAGGGAAGCTGATATAACCAAAGAAAGAATACAGAAGATTCTCGGGGCAGGAGCCAATGTGGTGTTGGTTAGTGGTGGCATAGATGACCTCTGCCTCAAGTATTTTGTTGAAGCTGGCGCAATGGGTGTTAGACGATGCAAAAAAGCTGACCTCAAGAGAATTGCAAGAGCTACCGGTGCTACTATGGTGTTGACACTGGCTAATCTTGAAGGTGAAGAGAGTTTTGATGCCAGCATGCTTGGTCAAGCTGATGAGGTAGTACAAGAAAGAATTTCCGATGATGAGCTGATTGTTATTAAACGACCCAAAGCTCGCTCATCATCCTCCATAATTCTGAGAGGTGCTAATGACTTCATGTTAGATGAAATGGAGCGTTCCATTCATGATGCAATCTGTGTGGTCAAGAGGGTGCTTGAATCTAAAATTGTTGTCCCTGGGGGTGGGGCTGTGGAGGCCGCACTGTCAATTTACCTTGAGAACTTTGCCACTTCGCTGGGTTCCCGAGAACAGCTAGCTATTGCTGAATTTGCAAATTCCCTTCTCGTCATTCCAAAAACACTGGCAGTTAATGCAGCACAAGATTCAGCTGATCTTGTAGCTAAACTACGAGCTTATCACAACACGTCACAAATCAACACAGAGCGCTCCACACTAAAATGGGTTGGCCTTGATCTGATTGAAGGAAAAGTACGTGACAACAAGAAAGCTGGAGTTCTAGAACCATCAATCAGCAAAATTAAATGTCTAAAGTTTGCTACAGAAGCAGCCATAACAATTCTAAGGATAGATGACATGATCAAATTGCGACCCGAAAAGAGTGAGGAAAGCGCTTATGGCCAAGCCAGGCAGCGTGGAGAACTTTAGAAGATAAAGATGTATACTTTCTATGTGGCCATAGGATCACAGGATCACCAAAAAACGATAAGAAGAAGAACTACAGGTTGCATCTTACAAGGATACATGTCCCATGACTGAAACAAAACAGTGGCTGTGAACTCAAATTTGCATCTTTACTTATTTACTTTTTCAGTCTCTTGCAGTGAGTGAGACTGCATTTTGGTGCAAAAGAAAAAAAAGTCTGTCATGTCGAGCATAAAATAAAACTTACGTTGTTGGCCAAGCATTTAGTCTTGTTGATTTGATTGCTTTTATCTGTTAAGTCGAGGCAAACAATTTTTCTCCCTGGCAAGCTTCTTTCCAGGAATGCTATTGTAGGCCTAGCTGATTTTGTAGTTGAGCGAGGGATGAATCAAGAAACGAACTCTAAGGTCGGGTCAGGACTATGTGAACAGGATTGCATTGCATGCCCTAGTTGTTCAAAAGGTGGTTATTGTTACCATTGGAAAACTCAATAGGTTTTGGTAGTATTTATGCACGGGATAACTGTATCCATCCTTTGGACAACTGGGCCCAAGAGATCAAAGAAGATTGTCCAGTTACATCAATGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9XT06	T-complex protein 1 subunit alpha OS=Monodelphis domestica OX=13616 GN=TCP1 PE=2 SV=1
Q32L40	T-complex protein 1 subunit alpha OS=Bos taurus OX=9913 GN=TCP1 PE=1 SV=1
P17987	T-complex protein 1 subunit alpha OS=Homo sapiens OX=9606 GN=TCP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007950 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR012715 all species →	Family	T-complex protein 1, alpha subunit	Interproscan
IPR002194 all species →	Conserved_site	Chaperonin TCP-1, conserved site	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan
IPR017998 all species →	Family	Chaperone tailless complex polypeptide 1 (TCP-1)	Interproscan
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR053374 all species →	Family	TCP-1 chaperonin-containing T-complex	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11353 all species →	CHAPERONIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005832 all species →	Cellular Component	chaperonin-containing T-complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09493	CCT1, TCP1; T-complex protein 1 subunit alpha	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.