Gene detail

Detailed information of FUN_008980-T1 in Acropora pulchra

Genomic Location: ptg000004l:1080107...1086529
NR annotation: XP_044181090.1, translocating chain-associated membrane protein 1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XI41	Translocating chain-associated membrane protein 1 OS=Rattus norvegicus OX=10116 GN=Tram1 PE=1 SV=3
Q9GKZ4	Translocating chain-associated membrane protein 1 OS=Bos taurus OX=9913 GN=TRAM1 PE=2 SV=3
Q5R7Z3	Translocating chain-associated membrane protein 1 OS=Pongo abelii OX=9601 GN=TRAM1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006790 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03798 all species →	TRAM_LAG1_CLN8	TLC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016447 all species →	Family	Translocation associated membrane protein	Interproscan
IPR006634 all species →	Domain	TRAM/LAG1/CLN8 homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12371 all species →	TRANSLOCATION ASSOCIATED MEMBRANE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006616 all species →	Biological Process	SRP-dependent cotranslational protein targeting to membrane, translocation	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0045048 all species →	Biological Process	protein insertion into ER membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14010	TRAM1; translocating chain-associated membrane protein 1	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.