Gene detail

Detailed information of FUN_009200-T1 in Siderastrea siderea

Genomic Location: contig_7:4011306...4060414
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_009200-T1

ATGAGTAAGAAGGCGACAGGTCGCAGAGGTGTTGTTCCTACAGTGGAACAGATCGTTTCAGACCAGATCACTCAGCTTGCAAACCAGTATTGGGCTCCTGGAGTAAAAAAGAGAGACTACAAACCACAGGTTGTTGATGACATttacagaaaagaaataaaaggaagcaaGTTTGCTGTGAAACGTGTTATGCTTCTAGAATTCAGCCAGTACCTTGAGAATTACCTATGGACCAACTTTGACCCAACTAAGGCAACTGTTGAACACTTGATGTCCATtgtagtgatggtgaatgaaaAGTTCAGAGAAGGTGTCCCACCATGGGAGTCATTCAAGAAAAATCCACAGCATTTCCACGGGTTTTTCCAGCGCATTATGGAAATAAGCTTGGCTGAGGAAGACGTCCTATCAATCAGGGAACAGTCTATAATCTTGGTCTTTTTGATTCACTGTTTCAACAGTCTGGAAATGGACCTTATAAGAGAACAGCTACAGCACCTGGTGTCTCTGCCAATGTGGATATGTCTTCTTCCGGAACGGTTAGAGCAAGAGTTGAAGAGTGTGCAAAAATACAGGAAATACTGGAATCAcatcaaaagaaaagaagaaaaggcaGAGGAAAAAAACAAGGCGAAACAGGAAAAAGAGAGGAAATACTTGTCCAACCTTGTTGAAAAGTTTCTTAAAATTTTAGAATCCATTCCAGAGACAGGAACTGTAGACAAGGATAAAGTACATTACTGTGAAAGATTCTTGGAACTGCTGGTTGACTTAGAGgcTTTGTTGCCCACCAGGAGATTCTTTAATACATTAGTTGACGACCACCATGTAGTGGTGAAGTGTCATCTTTCTGATCTAGCAAAAAGGGAGACTGAAGGAAGGTTGTTTAAACAACTATTGGACATGTTAAAATTCTACACCGGTTTTGAAATCAATGACGTGACAGGCATGGCCTTAACTGATCATGAGATGGTGGACATTCATTACAGCAAAATGGCTTCCCTCCAGcGAGCAGTTTTCAAGTATTTTCCTGAGCTTCATGACTTTGCCATGAGCAACATTGCCAGCATAGATACAAGGGAAGCTCTGCTTCAACATTTTGGATCTCTTTCGAATAAAACTCTTCATGAAGTGGCAGCATACCTGAAGTTATTGCCCTCGCCAGATGATGCTGGTGTGGAGAGCAACCGCGAATTTCTCTTGGAGATGTTGGTTTCTCGGCATGAGCGCCGTCTGTCTCAGATCGATGCCATCAATGAAATGCCACTTTATCCTACGGAACAGATTTTGTGGGATGAAAATATCGTTCCAACGGAATATTATTCGTCAGAAGACACATTGGCACTTCCCAAGCTGAACTTGCAGTTTTTAACTCTCCACGATTATCTTCTGAGAAATCTGAATCTCTTCAGATTGGAATCTACGTATGAGATTCGTCAGGACATGGAAGACGTGATTGCCAGAATGAAACCCTGGCAAAATGAGACTGGACAAACAGAGTTTGCTGGCTGGGCAAGAATGGGAACAAAAATTGTCAACTTCAGCGTAATTGAGGTATCCAAGCCTAATATCGGCGAGTCACGTCCGTCTCAAGTGAGAGCTGATGTCACCATTAACTTAAACATGAGGGACATCGTGAAAGGAGAATGGGAAGCCTTGAGGAAGCATGATGTAGTATTCTTAGTCACCGTTCGTCCAACTCATTCCGGACCAGTCAAGTACGATCGCACGAAGCCATTTAGAGAACAGTTTGGAGTTGATTATGTACGCGGAGCTGAGATTGAAGGAATGTTAGATGAACAAGGAAAAGTCATTGAAGAAGGCCCAGAACCTAAACCTGAATTCAAAGGAGACGAAAGAACATTCCGCTTGTGGCTTGATACAAACCAGTACCAACAGGACATGGCCGAGACGGTGCATGGATCAGAGGATGTCTACGAAACGTTCAACATTCTTTTGAGGCGTAAACCAAAAGAGAATAATTTCAAGGCCGTTTTAGAGACCATCCGGGATTTGATGAACACCTCATGTATTGTACCAGACTGGCTACACGACATCTTTCTTGGTTATGACGATCCCGGCGCCGCTCATTACAGCAGAATGCCAAATCAAATcagaaaattgaacttcaacgacactttcctcgattttgagcATCTGAAGTCCTGTTTTCCACAATACTCCGTAAAATGCACCACGGACAACCCCGCCGAACAAGTTCCACCCTTCAAGATAACATTTCCTGAGGCGCCTGACAGCAAGAAACGCAAACACGATGAAGAAGAAccgaaagaaacaaaacaagagcTGTTAGTTGAGCCATTTGTGGTGCCTAACCGCGGACCGTATCCCTTCAATCAACCCAAAAAGAATGCCGTTCCTTTCACTTCAACTCAAGTTGAAGCCATCAGAGCTGGGATGCAGCCAGGACTTACCATGGTTGTGGGACCTCCAGGAACAGGGAAGACAGACGTTGCAGTGCAAATCATTTCTAATATTTATCACAATTTCCCCGAGCAGAGAACACTGCTTGTCACTCACTCCAATCAGGCATTGAATCAACTGTTTGAGAAGATCATGGCCTTGGACATCGAAGAGCGTCATTTGCTTCGTCTGGGTCATGGAGAAGAAGCTTTGGAGACGGAAAAGGATTTCAGCAGGTATGGACGGGTGAACTTTGTACTTGCTAGCAGATTGGAACTGCTAAAGGAAGTTCAGCGACTGCAGGAGAGTCTAGGAGTGCACGGAGATGTTTCTTATACTTGCGAGACTGCTGGATATTTTTACCTTTATCAGGTTGTTTCTCGCTGGGAAGAGTACATGTCCAAGTTAAAGCCACGGAAAGGAGATGTCGCTGCGATATCTGAACTTTTCCCTTTTACCAAGTTCTTTGAAAATGCACCGCAACCATTGTTCAAAGGAGGAACATATGAAGAAGATATGGAAATCGCTGAGGGCTGCTACAGATACATAAAGAAGATTTTTGAGCAGTTAGAGgAGTTCCGAGCATTTGAGCTTCTTCGAAGTGGTCGCGACCGAACAAACTACCTATTAGTGAAGGAAGCTAAAATTATCGCAATGACTTGCACACATGCTGCTCTCAAGAGAAGAGACCTGGTTGAACTTGGATTTAAGTATGACAATGTTTTGATGGAAGAAGCAGCCCAGATCCTGGAAATTGAGACGTTCATTCCACTTCTGCTTCAGAACCCTGAAGATGGATACAATCGAATGAAGAGGGTCATCCTTATAGGCGATCACCACCAGCTTCCTCCAGTCATAAAGAACATGGCTTTCCAGAAGTTCTCCAACATGGAGCAGTCTCTATTTACAAGATTTGTACGGCTCGGTGTTCCCACAGTTCAACTTGATGCTCAGGGCCGTGCGAGATCGAGCTTATGTAGTCTGTATAACTGGCGGTATGAAAAGCTTGGTGATCTTCCTCACGTTAACACCTGGCCTGAGTATTGTGTGGAGAATCCGGGATTTTTCTTTGACTATCAGCTCATTGATGTGCCAGATTTTAATGGAGTTGGCGAATCAGAGCCAAACCCTTATTTTTATCAGAATCTCGGAGAAGCTGAGTACGCAGTCGCAATTTTCATGTACATGCGCTTGATTGGGTACCCCGCTGACAAGATCGCTATTTTGACCACGTACAATGGACAGAAGCATCTTATCCGTGACGTCATCAGACAGAGGTGTGCGAACAACCCGCTGATTGGACAGCCAAGCAAGGTGACCACAGTGGATCGTTACCAGGGCCAACAGAATGATTACATCATCCTGTCTCTTGTTCGTACAAAGACTGTGGGTCATATCAGAGACGTGCGCCGTCTTGTGGTAGCCATGTCACGTGCACGGCTCGGATTGTACGTGTTGGCGCGGGTCAGCTTATTCCAGAACTGCTTCGAGCTCAGGCCTGCCTTCTCTCAGTTGACCAGCAGACCGCTGAAGCTTTACTTAGCTCCAAGTGAGCGATATCCTCCTTGTAGACCGcGTGGAGTTCCCCCATCTGAAGCGCCATTCATCGTTGAAGACATGCCTCAGATGCATCGCTTCGTTTATGATTTCTACAATCAGTACGTTCAGTCACTGAGAGCGCAGCAGCAGtacatGGAAAACATTCCGCAGCCACCAGAAGAGGAAAAGGAGAGTGAAGCAACTGGAGAAAAGGAAGGTGAAGATGgagaagaaaaacagcaaacagaAGATGCGAGCGAAATCGAAGAGGAACAGGGATCCCCAATTGTGAATGAAGTTGAGGACATGGAGGCAGATGGCAACTAA

Transcript

FUN_009200-T1

ttccctaactGAGAGGTTCGAAAAGTTGGGATCCCACTGTATTAAGGTTCGGCACTGAATATGTTGGTTTGCTGAGGCGGGTAATGTTGGATGAGGGTGGTGGTGATTTCAGGTCACGCTTTGCCAAGAAGAATCAAGGAAAAAACCAGCCGGGATTTGAGTCGTCATGCACAGTTCTCCTCCCAACCCCAGCCCCCGTTCCCAAATAGCTAATAACCAAGAAGCGTTGCGTGAGTGAGAAAGCCACAGCCTTGTAGGAGCCATTTAATAGGCCATGTTTTACGAAGGTTAGACGATGTTCACGTTCACTAGGAAAATAATACTGCAATTCTCTCCCCACCAAGATTACCTTTTCAAGCTGTAACACTCGACATACCTGAAGACTGGGTATGAGACGACAAATTTGGATGGAGAAGGACTGGTACCAACATtcgtttccaaaatggcggcagaATGCTCTGGGAAAGTGCAAAGATTTGACTAAGGCTTACTTCTGTATGTACCCAGTTTAACGGCGATTACAAGACGCAGAACATTTCATACTGTAGTTTGAAATCGTCTTGCTTTGGGAAATAGGGAAAACATGAGTAAGAAGGCGACAGGTCGCAGAGGTGTTGTTCCTACAGTGGAACAGATCGTTTCAGACCAGATCACTCAGCTTGCAAACCAGTATTGGGCTCCTGGAGTAAAAAAGAGAGACTACAAACCACAGGTTGTTGATGACATttacagaaaagaaataaaaggaagcaaGTTTGCTGTGAAACGTGTTATGCTTCTAGAATTCAGCCAGTACCTTGAGAATTACCTATGGACCAACTTTGACCCAACTAAGGCAACTGTTGAACACTTGATGTCCATtgtagtgatggtgaatgaaaAGTTCAGAGAAGGTGTCCCACCATGGGAGTCATTCAAGAAAAATCCACAGCATTTCCACGGGTTTTTCCAGCGCATTATGGAAATAAGCTTGGCTGAGGAAGACGTCCTATCAATCAGGGAACAGTCTATAATCTTGGTCTTTTTGATTCACTGTTTCAACAGTCTGGAAATGGACCTTATAAGAGAACAGCTACAGCACCTGGTGTCTCTGCCAATGTGGATATGTCTTCTTCCGGAACGGTTAGAGCAAGAGTTGAAGAGTGTGCAAAAATACAGGAAATACTGGAATCAcatcaaaagaaaagaagaaaaggcaGAGGAAAAAAACAAGGCGAAACAGGAAAAAGAGAGGAAATACTTGTCCAACCTTGTTGAAAAGTTTCTTAAAATTTTAGAATCCATTCCAGAGACAGGAACTGTAGACAAGGATAAAGTACATTACTGTGAAAGATTCTTGGAACTGCTGGTTGACTTAGAGgcTTTGTTGCCCACCAGGAGATTCTTTAATACATTAGTTGACGACCACCATGTAGTGGTGAAGTGTCATCTTTCTGATCTAGCAAAAAGGGAGACTGAAGGAAGGTTGTTTAAACAACTATTGGACATGTTAAAATTCTACACCGGTTTTGAAATCAATGACGTGACAGGCATGGCCTTAACTGATCATGAGATGGTGGACATTCATTACAGCAAAATGGCTTCCCTCCAGcGAGCAGTTTTCAAGTATTTTCCTGAGCTTCATGACTTTGCCATGAGCAACATTGCCAGCATAGATACAAGGGAAGCTCTGCTTCAACATTTTGGATCTCTTTCGAATAAAACTCTTCATGAAGTGGCAGCATACCTGAAGTTATTGCCCTCGCCAGATGATGCTGGTGTGGAGAGCAACCGCGAATTTCTCTTGGAGATGTTGGTTTCTCGGCATGAGCGCCGTCTGTCTCAGATCGATGCCATCAATGAAATGCCACTTTATCCTACGGAACAGATTTTGTGGGATGAAAATATCGTTCCAACGGAATATTATTCGTCAGAAGACACATTGGCACTTCCCAAGCTGAACTTGCAGTTTTTAACTCTCCACGATTATCTTCTGAGAAATCTGAATCTCTTCAGATTGGAATCTACGTATGAGATTCGTCAGGACATGGAAGACGTGATTGCCAGAATGAAACCCTGGCAAAATGAGACTGGACAAACAGAGTTTGCTGGCTGGGCAAGAATGGGAACAAAAATTGTCAACTTCAGCGTAATTGAGGTATCCAAGCCTAATATCGGCGAGTCACGTCCGTCTCAAGTGAGAGCTGATGTCACCATTAACTTAAACATGAGGGACATCGTGAAAGGAGAATGGGAAGCCTTGAGGAAGCATGATGTAGTATTCTTAGTCACCGTTCGTCCAACTCATTCCGGACCAGTCAAGTACGATCGCACGAAGCCATTTAGAGAACAGTTTGGAGTTGATTATGTACGCGGAGCTGAGATTGAAGGAATGTTAGATGAACAAGGAAAAGTCATTGAAGAAGGCCCAGAACCTAAACCTGAATTCAAAGGAGACGAAAGAACATTCCGCTTGTGGCTTGATACAAACCAGTACCAACAGGACATGGCCGAGACGGTGCATGGATCAGAGGATGTCTACGAAACGTTCAACATTCTTTTGAGGCGTAAACCAAAAGAGAATAATTTCAAGGCCGTTTTAGAGACCATCCGGGATTTGATGAACACCTCATGTATTGTACCAGACTGGCTACACGACATCTTTCTTGGTTATGACGATCCCGGCGCCGCTCATTACAGCAGAATGCCAAATCAAATcagaaaattgaacttcaacgacactttcctcgattttgagcATCTGAAGTCCTGTTTTCCACAATACTCCGTAAAATGCACCACGGACAACCCCGCCGAACAAGTTCCACCCTTCAAGATAACATTTCCTGAGGCGCCTGACAGCAAGAAACGCAAACACGATGAAGAAGAAccgaaagaaacaaaacaagagcTGTTAGTTGAGCCATTTGTGGTGCCTAACCGCGGACCGTATCCCTTCAATCAACCCAAAAAGAATGCCGTTCCTTTCACTTCAACTCAAGTTGAAGCCATCAGAGCTGGGATGCAGCCAGGACTTACCATGGTTGTGGGACCTCCAGGAACAGGGAAGACAGACGTTGCAGTGCAAATCATTTCTAATATTTATCACAATTTCCCCGAGCAGAGAACACTGCTTGTCACTCACTCCAATCAGGCATTGAATCAACTGTTTGAGAAGATCATGGCCTTGGACATCGAAGAGCGTCATTTGCTTCGTCTGGGTCATGGAGAAGAAGCTTTGGAGACGGAAAAGGATTTCAGCAGGTATGGACGGGTGAACTTTGTACTTGCTAGCAGATTGGAACTGCTAAAGGAAGTTCAGCGACTGCAGGAGAGTCTAGGAGTGCACGGAGATGTTTCTTATACTTGCGAGACTGCTGGATATTTTTACCTTTATCAGGTTGTTTCTCGCTGGGAAGAGTACATGTCCAAGTTAAAGCCACGGAAAGGAGATGTCGCTGCGATATCTGAACTTTTCCCTTTTACCAAGTTCTTTGAAAATGCACCGCAACCATTGTTCAAAGGAGGAACATATGAAGAAGATATGGAAATCGCTGAGGGCTGCTACAGATACATAAAGAAGATTTTTGAGCAGTTAGAGgAGTTCCGAGCATTTGAGCTTCTTCGAAGTGGTCGCGACCGAACAAACTACCTATTAGTGAAGGAAGCTAAAATTATCGCAATGACTTGCACACATGCTGCTCTCAAGAGAAGAGACCTGGTTGAACTTGGATTTAAGTATGACAATGTTTTGATGGAAGAAGCAGCCCAGATCCTGGAAATTGAGACGTTCATTCCACTTCTGCTTCAGAACCCTGAAGATGGATACAATCGAATGAAGAGGGTCATCCTTATAGGCGATCACCACCAGCTTCCTCCAGTCATAAAGAACATGGCTTTCCAGAAGTTCTCCAACATGGAGCAGTCTCTATTTACAAGATTTGTACGGCTCGGTGTTCCCACAGTTCAACTTGATGCTCAGGGCCGTGCGAGATCGAGCTTATGTAGTCTGTATAACTGGCGGTATGAAAAGCTTGGTGATCTTCCTCACGTTAACACCTGGCCTGAGTATTGTGTGGAGAATCCGGGATTTTTCTTTGACTATCAGCTCATTGATGTGCCAGATTTTAATGGAGTTGGCGAATCAGAGCCAAACCCTTATTTTTATCAGAATCTCGGAGAAGCTGAGTACGCAGTCGCAATTTTCATGTACATGCGCTTGATTGGGTACCCCGCTGACAAGATCGCTATTTTGACCACGTACAATGGACAGAAGCATCTTATCCGTGACGTCATCAGACAGAGGTGTGCGAACAACCCGCTGATTGGACAGCCAAGCAAGGTGACCACAGTGGATCGTTACCAGGGCCAACAGAATGATTACATCATCCTGTCTCTTGTTCGTACAAAGACTGTGGGTCATATCAGAGACGTGCGCCGTCTTGTGGTAGCCATGTCACGTGCACGGCTCGGATTGTACGTGTTGGCGCGGGTCAGCTTATTCCAGAACTGCTTCGAGCTCAGGCCTGCCTTCTCTCAGTTGACCAGCAGACCGCTGAAGCTTTACTTAGCTCCAAGTGAGCGATATCCTCCTTGTAGACCGcGTGGAGTTCCCCCATCTGAAGCGCCATTCATCGTTGAAGACATGCCTCAGATGCATCGCTTCGTTTATGATTTCTACAATCAGTACGTTCAGTCACTGAGAGCGCAGCAGCAGtacatGGAAAACATTCCGCAGCCACCAGAAGAGGAAAAGGAGAGTGAAGCAACTGGAGAAAAGGAAGGTGAAGATGgagaagaaaaacagcaaacagaAGATGCGAGCGAAATCGAAGAGGAACAGGGATCCCCAATTGTGAATGAAGTTGAGGACATGGAGGCAGATGGCAACTAAACAATCCCTTAGAAATATTGATAGCAATATTTCTTCACGATTTCTTTAGAAGAACAGTGTACAGAGTTCTGCATGGACGAAGGCTGGTAATCTCTTGGCTAGGAGTTTATGTGTGGAATACTGTTCAAGCCGCGATGGAAGCCTAAACGGACTTCGTCATGGGGAATTTTTACGTTTTTGGTTCAAAACTTTAATGAAATCGTTACTAAGAACGTTTTGTCCTACAAGAAAAACTCCTAGAACATTACGAGTAAGATTTTCTcaagaaaacaaaccataaGCAGTTGTTAGCGTTTTTTCCAAGACACAATGGGAGAACTTGAACAAAACTGGTccactttttcaagttgcgttccATTTTCATCTCAGCCCTTTGCAGCCAAACACACGTATTTATAGCTTCAAACATGTAGTAGATCCATTTTAAACGAAATTGAAGGATTGTTTGATTCCAAAATGTCTTTTAGCTTAATTTAAAGTATTACTAAATCTAGGTGGCATATCCGGCTCTTAACGTCATTAATTGGAAAGACTGGGCTTCGGTTTCAACAGGCCAAATTTCAAAGAAGTTTACTCTTCCAATGGCAGAATCGCCAGATCTGCCCTCCCctactagactgcgagtagtctctaattttggcgatggcgattgtggcgCGGGCggaatacacacacgcgcgagCGCGaaacgcgacgcgaag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21143 all species →	Aquarius_N_2nd	Intron-binding protein aquarius, beta-barrel	Domain	Interproscan
PF21144 all species →	Aquarius_N_3rd	Intron-binding protein aquarius insert domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF16399 all species →	Aquarius_N_1st	Intron-binding protein aquarius N-terminal	Repeat	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048966 all species →	Domain	RNA helicase aquarius, beta-barrel	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR048967 all species →	Domain	RNA helicase aquarius, insertion domain	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR032174 all species →	Domain	RNA helicase aquarius, N-terminal domain	Interproscan
IPR026300 all species →	Family	CWF11 family	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12874	AQR; intron-binding protein aquarius	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.