Gene detail

Detailed information of FUN_009299-T1 in Colpophyllia natans

Genomic Location: contig_12:1426816...1434990
NR annotation: XP_020632239.1, E3 ubiquitin-protein ligase TRIM71-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_009299-T1

Transcript

FUN_009299-T1

ATGGATATCAAAACGTTGCTTCATAATCTCCGTGAAGAAGTGTCTTGCTCGGTGTGTTCCGACATATTTACCGATCCGAAACAGCTGCCATGCTTACACAGTTTCTGTCTGCACTGTTTGAAACATTGGCATAGGACGAGCCAAGGCTGCGACACGATCAGATGCCCGAAATGTCAAGCCGTTAGCAGGGTACCTGAAAGTGGCGATCTGAAAGATCTTCCAACCAGTTTTTATCTGAATGGCTTGATTGATGTGCTAGTAATCAAAGAGTGCAGAAGTAGCCAAGTAAGATGCGGCAACTGCGAGAAGAAAAGCTCCGAGACTTCTTATTGTTTCCAgtgttgcatattttattgtcaagagtGTGTAACTGGACACAACATTATGAAAGGCAATAAAGATCACCGTGTTCTGGCGCTGAAAGACTTTCAAGACAAGGACTATGAGGATGTGCTAAAGCGACCTGTTTTTTGTGCAAAGCAACGGCACGAGAAAGAAGAGTTAAAGTACTTTTGTAAGAACTGTGAAATGGCGGTGTGCCAATCTTGTGTTTTGATGGATCATTCTGGTCACGCTTTAGAGCACATAGAAGACGAAGCTGAAAGACAAAAGAttgaaatgaaatcaatgatTGAAATACAGCGGCATAATTTACAAGCAATGATGAACACTGTTAGTAAACTTGATGAAGACTACGCGAAGATCATACAACAATGCGAAGATGTGAAGAGAGACGTTCAGAGGACTGTTGACATTTTAATTGCCAATGTTGAATTGAAGAAGCAAACTATCTTTGCAGTGGTAGAAGAcgaaacaaggaaatcacttgaaAATTTAACATTGCAAAAGACCGAGATCGGGCATCAAATAGAGGTGATCAAATCATCGTTGGAGAAAGCTGATAAAGTTTTAACGCGAAGTGCAAATGCTGAAGTCGTTCAAGTGAAAAAATCATTACAAGCAATCTTGGAGGGAGTTGATCAAACTACTAAGCCAACTGAGCGTGACCCGAAAGGTCTTTCGACTTTGGTTTTCGCGCCAAATCAAAAGATGCTAAAGACCGTCAACACCGAAGAAATTGGAACACTGGAAATACTGAACGAAACTCAAGCAAGTCAATCTGTTGTTGAAGGCAAGGGCATCCAAGAAGGAACTGTTGGAGTTGAAGCACAGTTTGTTCTGACTACAAAAACCTCAGTGGGAAGAAAGTGTTACAGCAAACATGACCGTGTAACGGTAGAGATCAGGGACGAACAAGAACGAGAATGCGCCACGGAAGTGCaaataaatgacaataaggATGGAAACTACAAGATCAGTTATTCACTGAAAGACCAAGGCAAATACAAACTGGCAGTAAAGGTAAACGGCAAGCATGTTCTTAATAGTCCTTTTTCTATTAAggtgaaattatttcaattaaGACCTGTCTTAATATCTTTTGGAAAAGGTTCGTCTGTTGGAATGTTATCTTTTCCCTGGGGGGTGGCAGTGAATGCCAGGGACGAGATAGCTGTAACTGAGGATTGGAACCACAGGATTCAAATCCTCAACGGTGATGGAAAATACTTGAGATCCTTTGGTCAGGAAGGTACCGGAGCGGAACAATTTATGTATCCTGGGGGAATAACTTTCCATACAAACGGAAATATTTTCGTAGCAGACAATTGTAACCATAGGATCCAGATTTTCAGTGGGGAGGGTGAACACGTGGGTATGTTTGGTGGGGAAGGAAACCTTGATAGTCAACTCTCTTATCCTAGGGGTTTATCTGTAGACAGTGATGGCAATATCATCGTTGCCGATACAGGTAACAAACTGATTAAGATCTTTTCTCCTGATGGCAAGTTTCTAATGAAGATAGGTGGGTGGGGTTCTTTTACTTTTCCTATCCACTGTGTTCAGTGTGATAGATATCTCATAGTTTCAGACAGCAGTGAAAATTGTATAAAGGTTTTTAACTACAATGGAAGCTTTAagtacaagtttggaaagcagGGTGCAGGGGACGGGGAATTTGTTTCTCCCCGTTGTTTGACAGTGAACAAGTCAGGACACCTGATAGTCTGTGATTCAGAATACCATATGGTCGCACGTCCTCCACGCCGTTCTCTCTTTTCGCCAGTGTTCATCATGGGCCACTCGAATGTTTGGTTTTCTCACCCAAGAACTTACGGACCAGGCTCAAGATCCTGCCGTGTTTGCTTCAACCACCATGGCCTTATCAGAAAGTATGGACTGAACATTTGTAGGCGATGCTTTAGGCAGTATGCCAAAGACATTGGCTTTCAGAAGTTCCATTAGTCAAGAGTACAATGAGGTCAAAGCAACGATGCAGAATAATAAGAATTTGTTTGTACAACAACTGACTGTAAAATCTTTCTGAATGTTGTATTAAAGCATTGTTGATATTTATCGCATTTACAATCAGGTGTTTTTCTGTCTGAATGTGAAGGGACAGAGCATTTAGATTCTAGAAATTATAAGGTTGTCCATAAAACAAGCACTTACCTCTGGTTTTTGTAGTGTGAAATGGCTTGAAGTTTGTGTTTTTCTACTTCCTCCTGGATGGCATACTGGTCTATTGTTGGGTTACCCAGAGCAGTTTATTTTTCTGGTATGCATTACACATGGGCAGAGTCTGCAAGGCATTAAGTAACCTCTTCTCTGGGCATTCACTGCAGTTGGGCACAACGTGAAAAATGGAGGAAAGTGCAGCACAGGAAGGTTAAGCCATTCTTTCATACTACACCCCAACTAGCTGAATGACTGGAAGAGGCTTTGTTGAAGGAGATTAGTGACTTCTAAATAACACATCACAAAAACAATGAGGTGCCTGTGCACAGTAACAATAATTAAACTGTGCCTCTCACatattttttcctgtttcaaAACTTGCAGTGTAGGTGTTGGACTTCAGAAGATAACACCTTGATCTTGATTTCCTGAATATTGCAAAAACTACACTTGCTTTCCATCACTCATTTTAACTATTGTATAGCGGCTGGTATGTAGCCTGTACAATGACAAGCACAATTGGACGGCAGTATTTCgagaaaaaagatatttctgCATGGGCTGTATTAAAAATTTGCATGAGAAGACAGCAGAAAATTACAACTTAAGGTATAGGAACCAGAGTTTATTTATTTGCACTTTTCAATGAAAAAGCACTAAAAAAGCATTACATATTATTGGAGTTATTCAGTCACGgttgggccacttggcttgtatgcaggcTTCACCTTTATAAAAGTTAATGCCCATGTCATCAATTTGAACCTCTCTCCAACTCTTCTCCCTGGGGCTCTTCCCTGCCATCAAAGTGTGTGTAGACATGCCATCTGCTGgatattgattattttgaaaatgtaaaattggCCAGTTTCTGAGTGCTTGTTCAGCCTC

Protein

Uniprot

Gene family

Uniprot term	Description
Q4PM47	Small ribosomal subunit protein uS14 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1
Q6F473	Small ribosomal subunit protein uS14 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1
Q4LAY1	Small ribosomal subunit protein uS14 OS=Scarabaeus laticollis OX=292456 GN=RpS29 PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00253	Ribosomal_S14	Ribosomal protein S14p/S29e	Family	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF17170	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR001209	Family	Small ribosomal subunit protein uS14	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR018271	Conserved_site	Small ribosomal subunit protein uS14, conserved site	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR043140	Homologous_superfamily	Small ribosomal subunit protein uS14 superfamily	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan