Gene detail

Detailed information of FUN_009308-T1 in Acropora pulchra

Genomic Location: ptg000004l:5154298...5166459
NR annotation: XP_029213500.1, NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_009308-T1

TTGTTTGTTATGTAAGCCGGCCTCTGGAAGTTGTGTATTTGGAAGCTGCGTGATCAACTTACGCAAATCATGGCAAAGTCTTTGGCCAAACTGCAGCCTAAAGGCTTGCAAGCTGGACATCTGCCATCACTGTGTCGTGCTCTTGCTGGCATTCGCCTTTCGTCAACAGCTGCAACCTCAACACCACCAGCAAAAACGTCATTTGGAAATATGAAGGATGAAGATCGCATCTTTACAAACTTATATGGAAGACATGATTGGAAGCTAGCTGGAGCTATGCAAAGGGGTGACTGGTATAAAACCAAGGAGATCATATTGAAGGGAAAAGATTGGATCATCAAGGAAATCACAAAGTCTGGACTCAGAGGAAGAGGTGGAGCAGGTTTCCCAACTGGCATGAAATGGGGATTTATGAACAAGCCATCTGATGGAAGGCCGAAGTATCTTGTGGTTAATGCTGATGAAGGGGAACCAGGAACATGTAAAGACAGAGAAATTATGAGAAATGACCCGCACAAGTTGATTGAGGGCTGTTTGGTGGCAGGAGCAAGTATGGGGGCAAGAGCAGCCTACATTTACATCAGAGGCGAGTTTTACAATGAAGCATCTAATATGCAGTTAGCAATCAACGAGGCCTACAGGGAGGGATTGATTGGTCGCAATGCATGCGGCAGTGGATATGACTTTGATGTGTACATGCACAGAGGAGCAGGGGCTTATATCTGCGGAGAAGAAACGGCACTGATCGAGAGTTTGGAAGGAAAGCAAGGCAAACCTCGTCTGAAGCCACCATTCCCTGCAGATGTTGGTGTGTTTGGCTGTCCTACCACTGTGGCTAACGTCGAGACAGTTGCCGTAGCTCCGACGATATGCCGAAGAGGAGGAGATTGGTTTGCTTCCTTTGGTCGGCCAAGAAACACTGGAACAAAACTTTTCAATATCTCTGGACATGTGAATCATCCATGCACTGTCGAAGAGGAGATGTCTATTCCATTAAAGCTCTTGATTGAAAAACATGCTGGCGGAGTGATTGGTGGCTGGGACAATCTCCTAGCAGTTATTCCTGGTGGCTCCTCGACTCCGCTTATTCCCCTAAGTGTTTGTGAAGATGTCCTGATGGATTTTGATGCCTTGGTGGAGGCACAGACTGCCTTGGGGACAGCTGCTGTGATTGTCATGAACAAACAGTGTGATATTGTCCATGCAATAGCAAGATTGATTGAATTTTACAAGCATGAGAGCTGTGGACAGTGCACACCATGTAGAGAGGGATGCAGTTGGATGACTACAATTATGTACAGATTCGTCGAAGGCAATGCGACACCAGATGAAATTGACATGTTATGGGAACTTAGCAAGCAGATTGAAGGTCACACCATCTGTGCTTTGGGGGATGGCGCTGCCTGGCCTGTGCAGGGTTTGATCCGACATTTCAGACCGCTATTGGAGAATCGCATGGCCGATTTCGCTGCCAGGCAAACAGAGAAAAGTCAATCGGCGGCTTGAATCCAGCTGCTTTTCAGCACCTCTACCAGGAAAAATTTTCCCTCACTCCTTGTTCTTTATTTCAGATATTTCTTTTGATATAGCGGAATATCGTGTGATTGTTTGGTGCTGTTTGCACTTCAACATGTATTGTACACGAAGAAATGAAAACAATTTTGCAGTGCCCAGAAAAGAATAAACCTTGTTGGTAACTTGTAGCAACACTTTTCAAGTTGTTTTAATTTTCGACTTTGCACAAGAATTAGGTAAATTCTTCCTCGAGTGTCTCATTTCCCTTCTGCGAATTCGCTTTGTGCTCTGATATACAACATTATGTGTGAACTTTGATTCGCCAAATTCGCTGTGCATTTTATGTACATAGTCAATAAATTAGAATTTTAAGCAAGAAATAACGTTCCGGGAGGAACAACTTACAACAAATTTTTCTTTGTTTCTCCTTCCTCGGTGAGTGAGTTTCTTGAGCAAAGAGCACAACGCACGTATCATTTTCTTCCGTATGATTCTTGAGAAAAGCTTTCACTGGTTGGCCTTTGCAGGAAGCTTGTTATCTCGCTTCGGAACAAGGGCTCGTTGAGTTTAGCTTCCTTCGAGACGCTAGCACCCAAACGAAGTCTTCCAGAGGCAACAATTACAAACACACGGACCAAACATACCAACGAATACAGCAAAGAATCATCGACTTGATAAATAGCAAGAACGTGGAATGGTAAATATGTCAAGGCTTTGGTTGGGAGTATGAAAACCGCGGCGAAAACTGACTTTTTCGCTTTTAACTTCGAATGCGACGCAATGGCTTGCTTCAACAGTCGTTTACCTGCTCTTGCAAGGCCGTCAATAATGTACACCATATCGCACAGGGAGACCATCCATGCGTAGAACAGACTTGCGTTGTTTGGATTAACACTTGCAATAGCCCAGCCTGTTATAACACTGTTCATAACATAAAATCCCCACATCCTGGAAAATACCATTGGTAATGGCACCATGTAGGCGAAGTGGTCGCTTGCTCGGCAACGATTGAATTACGAAACAATAGTCGATAGCTTTTTGCGCGCGCTTATTTCTGCTGATCCCACAATTCTTTTTGTAGTTGAGCCTGCGCTCCTCGGCGCGCGGTTGGGGGGCGCCAGAGGCGAATTTTGCTCATTAACAGATGCTTATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0MQI6	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Pan troglodytes OX=9598 GN=NDUFV1 PE=2 SV=1
P49821	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens OX=9606 GN=NDUFV1 PE=1 SV=4
Q91YT0	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Mus musculus OX=10090 GN=Ndufv1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004063 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01512 all species →	Complex1_51K	Respiratory-chain NADH dehydrogenase 51 Kd subunit	Family	Interproscan
PF10589 all species →	NADH_4Fe-4S	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001949 all species →	Conserved_site	NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site	Interproscan
IPR037207 all species →	Homologous_superfamily	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily	Interproscan
IPR037225 all species →	Homologous_superfamily	NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily	Interproscan
IPR050837 all species →	Family	Complex I 51 kDa subunit	Interproscan
IPR019575 all species →	Domain	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	Interproscan
IPR011537 all species →	Family	NADH ubiquinone oxidoreductase, F subunit	Interproscan
IPR011538 all species →	Domain	NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11780 all species →	NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008137 all species →	Molecular Function	NADH dehydrogenase (ubiquinone) activity	Interproscan
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006120 all species →	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03942	NDUFV1; NADH dehydrogenase (ubiquinone) flavoprotein 1	EC:7.1.1.2	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.