Detailed information of FUN_009332-T1 in Siderastrea siderea

Genomic Location: contig_7:6269113...6272561
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13692
all species →		Glyco_trans_1_4Glycosyl transferases group 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050194
all species →		FamilyGlycosyltransferase group 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45947
all species →		SULFOQUINOVOSYL TRANSFERASE SQD2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016757
all species →		Molecular Functionglycosyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_009332-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_009332-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
77TPM > 0
7Conditions
837.7Max TPM
103.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 19 124.18 733.91
holobiont · low.pH Control.temp 20 18 116.84 778.53
holobiont · control.pH_high.temp 20 17 105.41 837.68
holobiont · control.pH Control.temp 19 17 89.05 478.99
Whole organism 4 4 19.73 35.21
unannotated 1 1 43.91 43.91
live coral tissue/skeleton 1 1 46.64 46.64

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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