Detailed information of FUN_009333-T1 in Siderastrea siderea

Genomic Location: contig_7:6283276...6334456
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00017
all species →
SH2SH2 domainDomainInterproscan
PF07714
all species →
PK_Tyr_Ser-ThrProtein tyrosine and serine/threonine kinaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001245
all species →
DomainSerine-threonine/tyrosine-protein kinase, catalytic domainInterproscan
IPR000299
all species →
DomainFERM domainInterproscan
IPR000980
all species →
DomainSH2 domainInterproscan
IPR051286
all species →
FamilyJanus Kinase (JAK)Interproscan
IPR036860
all species →
Homologous_superfamilySH2 domain superfamilyInterproscan
IPR011009
all species →
Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR000719
all species →
DomainProtein kinase domainInterproscan
IPR017441
all species →
Binding_siteProtein kinase, ATP binding siteInterproscan
IPR008266
all species →
Active_siteTyrosine-protein kinase, active siteInterproscan
IPR020635
all species →
DomainTyrosine-protein kinase, catalytic domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45807
all species →
TYROSINE-PROTEIN KINASE HOPSCOTCHInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004672
all species →
Molecular Functionprotein kinase activityInterproscan
GO:0006468
all species →
Biological Processprotein phosphorylationInterproscan
GO:0005856
all species →
Cellular ComponentcytoskeletonInterproscan
GO:0004715
all species →
Molecular Functionnon-membrane spanning protein tyrosine kinase activityInterproscan
GO:0005126
all species →
Molecular Functioncytokine receptor bindingInterproscan
GO:0005829
all species →
Cellular ComponentcytosolInterproscan
GO:0007259
all species →
Biological Processcell surface receptor signaling pathway via JAK-STATInterproscan
GO:0019221
all species →
Biological Processcytokine-mediated signaling pathwayInterproscan
GO:0030154
all species →
Biological Processcell differentiationInterproscan
GO:0035556
all species →
Biological Processintracellular signal transductionInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0004713
all species →
Molecular Functionprotein tyrosine kinase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_009333-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_009333-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
7TPM > 0
7Conditions
4.3Max TPM
0.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 1 0.17 3.19
Whole organism 4 4 1.03 1.75
unannotated 1 1 1.36 1.36
live coral tissue/skeleton 1 1 4.34 4.34

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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