Detailed information of FUN_009385-T1 in Siderastrea siderea

Genomic Location: contig_7:6952125...6981770
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14655
all species →		RAB3GAP2_NRab3 GTPase-activating protein regulatory subunit N-terminusRepeatInterproscan
PF14656
all species →		RAB3GAP2_CRab3 GTPase-activating protein regulatory subunit C-terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026059
all species →		FamilyRab3GAP regulatory subunitInterproscan
IPR032839
all species →		DomainRab3-GAP regulatory subunit, N-terminalInterproscan
IPR029257
all species →		DomainRab3GAP regulatory subunit, C-terminalInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12472
all species →		RAB3-GAP REGULATORY DOMAINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0043087
all species →		Biological Processregulation of GTPase activityInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19937RAB3GAP2; Rab3 GTPase-activating protein non-catalytic subunit-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_009385-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
7TPM > 0
7Conditions
14.8Max TPM
1.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 0.65 12.94
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 11.57 14.85
unannotated 1 1 9.78 9.78
live coral tissue/skeleton 1 1 12.44 12.44

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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