Detailed information of FUN_009394-T1 in Siderastrea siderea

Genomic Location: contig_7:7068707...7070579
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001176 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03067
all species →		LPMO_10Lytic polysaccharide mono-oxygenase, cellulose-degradingDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004302
all species →		DomainCellulose/chitin-binding protein, N-terminalInterproscan
IPR052282
all species →		FamilyStarch-active lytic polysaccharide monooxygenaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR36575
all species →		BINDING PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G14430)-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for FUN_009394-T1 in Siderastrea siderea.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_009394-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_009394-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
20TPM > 0
7Conditions
171.4Max TPM
6.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 1.85 20.25
holobiont · low.pH Control.temp 20 4 11.36 171.38
holobiont · control.pH_high.temp 20 3 1.34 12.52
holobiont · control.pH Control.temp 19 4 10.79 165.16
Whole organism 4 4 2.24 5.52
unannotated 1 1 0.13 0.13
live coral tissue/skeleton 1 1 6.01 6.01

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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