Detailed information of FUN_009437-T2 in Siderastrea siderea

Genomic Location: contig_7:7572954...7606330
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00536
all species →		SAM_1SAM domain (Sterile alpha motif)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001660
all species →		DomainSterile alpha motif domainInterproscan
IPR013761
all species →		Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR037634
all species →		DomainProtein Smaug, SAM domainInterproscan
IPR050897
all species →		FamilySMAUG/VTS1 RNA-bindingInterproscan
IPR037093
all species →		Homologous_superfamilySmaug, PHAT domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12515
all species →		STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0017148
all species →		Biological Processnegative regulation of translationInterproscan
GO:0030371
all species →		Molecular Functiontranslation repressor activityInterproscan
GO:0043488
all species →		Biological Processregulation of mRNA stabilityInterproscan
GO:0000289
all species →		Biological Processnuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K27396SMG; protein Smaug-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_009437-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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